Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02743 ATGTTAAGCAAAAAATCGAGTTTAACAGTTTATCCATTTCGTCCTATCCAATTGAAACCAAGAAGTGGATATGGTTCCTTATCTAGTCAATACTCCATATCTCATAGCTCTTTCACTGCCACATGTTCATCAACACACAACACAACTATGGAAGCTGTGTTCCTTACCAAACCAATTTCTCACTTCAAACCCAAACACCACTCTCTCACTCTAACTCCCAaacatcaccaccaccaccaccatcaatCTCTCCCCATCCGCCACAAACCCACCAACTTCCCCACCGTCACCACCGCActtcaaaaccaacaacaacaaacaacacCCAAAGACATCGAAGATGAATCCTACGGCGAAGTCAAAAAAATCATTGGAAGCAAAGCTCTCGAAGATTCCACCGGAATGGAATATCTCATCGAATGGAAAGACGGCCATGAACCCTCCTGGGTTCCGGCAGACTTCATAGCAAAAGACGTCGTCTCCGAATACGAAACTCCATGGTGGACCGCCGCAAGAAAATCCGACGAAATAGCACTCAAAACAATCCTCGAAGCAGACGATAACCGCGACGTGAACGCTGTAGACTCCGACGGTAGAACCGCACTACTCTTCGTAGCAGGACTCGGCTCAGAGCCATGTGTTAAACTCTTAGCAGAAGCCGGCGCGAATCTCGACCATCAAGACAATAGCGGTGGCTTATCCGCACTTCACATGGCAGCTGGATATGTAAGACCCGGCGTGACGAAGCTGCTTTTAGAACTCGGTGCGGATCCAGAAATCACCGACGACCGTGGAAAAACAGCGTTGGATTTAGCTAGAGAGTTATTGAAAGCAACGCCGAAAGGGAATCCAATGCAATTTGGGAGAAGAATTGGGTTAGAAGGGGTTGTTAGGGTTTTGGAAGAAGCGGTGTTTGAGTACGTTGAGGTGGAAGAGATTATGGAAAAGAGAGGGAAAGGTGAGAATTTGGAGTATTTAGTGAAATGGAAAGATGAAAGTGCTAATGAGTGGGTGAAAGCGAGGTATGTGGCAGAGGATTTAGTGAAAGATTATGAAGCTGGTCTTGAATATGCGGTGGCGGAAGCGGTGGTTGGTCGGAGAATTGGGGATGACGGGAAATATGAGTGTTTGGTTAAATGGGTTGATTTGGAAGAGCCTACTTGGGAGCCTGAGGAGAATGTTGATTCTGAGCTTGTTAAGGTGTTTGAATTGAGTAATAATAATCAAGCCCAGCCCAAGTCCAGTATTGATAATGGGCTTTCTACTGTTGCTTTTAGTCAGGATGGCCCAACTAGTGTTAGCacatga 1308 0.4404 MLSKKSSLTVYPFRPIQLKPRSGYGSLSSQYSISHSSFTATCSSTHNTTMEAVFLTKPISHFKPKHHSLTLTPKHHHHHHHQSLPIRHKPTNFPTVTTALQNQQQQTTPKDIEDESYGEVKKIIGSKALEDSTGMEYLIEWKDGHEPSWVPADFIAKDVVSEYETPWWTAARKSDEIALKTILEADDNRDVNAVDSDGRTALLFVAGLGSEPCVKLLAEAGANLDHQDNSGGLSALHMAAGYVRPGVTKLLLELGADPEITDDRGKTALDLARELLKATPKGNPMQFGRRIGLEGVVRVLEEAVFEYVEVEEIMEKRGKGENLEYLVKWKDESANEWVKARYVAEDLVKDYEAGLEYAVAEAVVGRRIGDDGKYECLVKWVDLEEPTWEPEENVDSELVKVFELSNNNQAQPKSSIDNGLSTVAFSQDGPTSVST 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02743 435 ProSiteProfiles Chromo and chromo shadow domain profile. 358 394 IPR000953 -
Tsu02g02743 435 ProSiteProfiles Ankyrin repeat region circular profile. 197 229 - -
Tsu02g02743 435 ProSiteProfiles Ankyrin repeat profile. 197 229 IPR002110 GO:0005515
Tsu02g02743 435 Gene3D - 114 161 - -
Tsu02g02743 435 Gene3D - 304 353 - -
Tsu02g02743 435 ProSiteProfiles Ankyrin repeat profile. 231 263 IPR002110 GO:0005515
Tsu02g02743 435 ProSiteProfiles Chromo and chromo shadow domain profile. 308 337 IPR000953 -
Tsu02g02743 435 MobiDBLite consensus disorder prediction 409 435 - -
Tsu02g02743 435 Gene3D - 354 404 - -
Tsu02g02743 435 ProSiteProfiles Ankyrin repeat region circular profile. 231 263 - -
Tsu02g02743 435 Gene3D - 162 303 IPR036770 -
Tsu02g02743 435 SUPERFAMILY Chromo domain-like 113 167 IPR016197 -
Tsu02g02743 435 Pfam Ankyrin repeats (many copies) 217 272 IPR002110 GO:0005515
Tsu02g02743 435 SMART chromo_7 306 356 IPR000953 -
Tsu02g02743 435 SMART chromo_7 357 407 IPR000953 -
Tsu02g02743 435 SMART chromo_7 116 168 IPR000953 -
Tsu02g02743 435 Pfam Chromo (CHRromatin Organisation MOdifier) domain 360 402 IPR023780 -
Tsu02g02743 435 SMART ANK_2a 231 260 IPR002110 GO:0005515
Tsu02g02743 435 SMART ANK_2a 197 226 IPR002110 GO:0005515
Tsu02g02743 435 SMART ANK_2a 162 193 IPR002110 GO:0005515
Tsu02g02743 435 PANTHER HOMEOBOX PROTEIN WARIAI 50 411 - -
Tsu02g02743 435 PANTHER SIGNAL RECOGNITION PARTICLE 43 KDA PROTEIN, CHLOROPLASTIC 50 411 IPR030300 GO:0009416|GO:0009507|GO:0045038|GO:0080085
Tsu02g02743 435 SUPERFAMILY Chromo domain-like 360 402 IPR016197 -
Tsu02g02743 435 CDD CD3_cpSRP43_like 355 404 - -
Tsu02g02743 435 SUPERFAMILY Chromo domain-like 306 354 IPR016197 -
Tsu02g02743 435 SUPERFAMILY Ankyrin repeat 162 274 IPR036770 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02743 192 272 CAMTA Transcription Factor Family AT5G09410 41.379 7.41e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02743 K12271 - gmx:100818382 540.036
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g02743 02 29121689 29123048 Tsu02g02743 02 29121689 29123048 ECH