Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02726 ATGACTACTATTCCGGGTTTTCGATTCCGTCCGACGGCAGTGGAATTATTGAGGTATTTTCTGAAAAGGAAGTTGATGGGGAAAAAATTTCATGATAAAGTGATTGCCGAACTTGATATATACAAGCATGCACCTTGGGATCTCCCGTATAAATCGTATTTGCAAAATGGTGATCTGGAATGGTACTTTTTCTGCCCGATTGTGAAGAAGCATGGAAGTGGAGGAAGGTTGAATAGAGCCACAGAAATTGGCTTTTGGAAAGCAACTGGTAAGGATAGAGCTGTCCAATATAATAATCAAACTGTTGGAATGATAAAAACATTGGTATTTCACATTGGAAAAGCCCCTCGTGGTGATCGAACCGATTGGGTTATGCATGAGTATAGGCTTGAAGATAAGGACCTGGCCGATAGAGGGATTGTTCAGGATTCCTATGTAGTCTCTAAAGTGTTTCAAAAGGAAGGTCCTGGTCCTCGGAATGCTGCACAATATGGAAGGCCGTTTAACGAGGAAGATTggagtgatgatgatgaagttggATTACCTTTTGCTGAATCGCCTGCGCTAGTTGCCGGTTTGGCTGTGACCACTAATAGTTCTGTTCTAAATGATGCTGTCTATTCATGTCAAACAGGATTGGTCTCTTCTCCTGATGCTGTGAGCTCATGTGAAACAGGATTGATAACTTCTCCCGATCCTGCGAATTCATGTCAAATGGGATTGGTCTCTTCTGCCGACGCTGTTTATTCATGTCAAACAGGATTGGTCTCTTTTCCTGATGCTGTGAGATCATGTCAAACAGGATTGATATCTTCTCCCGATCCTGCGAATTCATGTCAAATGGGATTGATGTTGCCTTCTCCCTACCCTGCGAATTCATGTCAAACAGGATCACTGCCTTCTTCCAACCTTACAAATTCATATCAAACAGGATCGATGCCTTTTTCCGACCCTGCAAATTCATGTCAAACAGGACCGATTGCTTCTCCCGACCTTGCAAATCATTCATATCCAGACAATCAAGCTGTTAATAATGATGATATTTTATCAATGCTTGATATTTTCAATGACGGCGACATCTATCCTGAGGAAAATATTGCTAAAGGTGCTTCTCCTGATGATATTTTAAGTGACTTTTTTGAGGATTTGGGAGACCTAGACTGTTCGGCGTTGGGATCCTTTGGCCAGAATGCCGAGTTTAGCACAAACTTAGATTTCATTGAGTTGACTGATGTAGACTCTGAGTTGTTCTGGCAGAGTATTGCACCTGGAAGCTGgggtcaaaataaataa 1293 0.4091 MTTIPGFRFRPTAVELLRYFLKRKLMGKKFHDKVIAELDIYKHAPWDLPYKSYLQNGDLEWYFFCPIVKKHGSGGRLNRATEIGFWKATGKDRAVQYNNQTVGMIKTLVFHIGKAPRGDRTDWVMHEYRLEDKDLADRGIVQDSYVVSKVFQKEGPGPRNAAQYGRPFNEEDWSDDDEVGLPFAESPALVAGLAVTTNSSVLNDAVYSCQTGLVSSPDAVSSCETGLITSPDPANSCQMGLVSSADAVYSCQTGLVSFPDAVRSCQTGLISSPDPANSCQMGLMLPSPYPANSCQTGSLPSSNLTNSYQTGSMPFSDPANSCQTGPIASPDLANHSYPDNQAVNNDDILSMLDIFNDGDIYPEENIAKGASPDDILSDFFEDLGDLDCSALGSFGQNAEFSTNLDFIELTDVDSELFWQSIAPGSWGQNK 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02726 430 Gene3D NAC domain 12 155 IPR036093 GO:0003677|GO:0006355
Tsu02g02726 430 PANTHER PLANT NAC DOMAIN PROTEIN 3 249 - -
Tsu02g02726 430 ProSiteProfiles NAC domain profile. 3 153 IPR003441 GO:0003677|GO:0006355
Tsu02g02726 430 SUPERFAMILY NAC domain 4 153 IPR036093 GO:0003677|GO:0006355
Tsu02g02726 430 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 290 403 - -
Tsu02g02726 430 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 3 249 - -
Tsu02g02726 430 Pfam No apical meristem (NAM) protein 5 130 IPR003441 GO:0003677|GO:0006355
Tsu02g02726 430 PANTHER PLANT NAC DOMAIN PROTEIN 290 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02726 Tsu-Chr2 28916857 28918149 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02726 5 214 NAC Transcription Factor Family AT5G64060 56.190 3.68e-79 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Tsu02g02726 NAM 8.6e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02726 - - mtr:MTR_8g093580 562.762