Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02724 ATGGATTGTACACCTGCTAGAAAAACGCAGAAGGCTGACCGAGAAAAGTTAAGGAGGGATCGACTCAATGAACAATTTGTAGAACTGGGTAACATTTTAGACCCTGATAGGCCCAAAAACGATAAAGCAACCATTCTAGGCGATACAGTTCAATTGCTGAGGGACCTTACTTCTCAAGTTAGTAAACTAAAAGATGAATATACTATGCTAAATGAAGAATCTCGTGAGttGTCTCAGGAGAAAAATGATCTCAGAGAAGAAAAGGCTTCTCTTAAATCAGATATTGAGAATTTGAATAACCAGTATCAGCTTCAACTAAGGACTATGTATCCATGGCCTGCAATGGATCATTCCGTTATGATGGCTCCACCATCATATCCGTATCCAGTCCCAATGGCAGTACCTCCTGGTTCAATTCCCATGCAGCCGTACCCCTACTATGCTAATCAACATCCTGCGGTCATCCCTAACCCGTGTTCAACATATGTTCCTTTTTTAGCCCCGAATACAATTGTTGAACAACAATCAACTCAGTACGTATCCCCGCCTCTTCATCCAGGTAGCCGGTCCCATGTATCAGGAAAACAAGACTCCAAAAACAAATCGTCGAGGGAGAGCAAGGCTCAAAGAAATGAGGATTCCAATGATGTAGCCACGGACCTTGAGTTGAAGACTCCCGGGTCTTCTGCAGAACAGGATTTATCATCCGCACAAAAAAAATCTAGCAAGTCATCAAGGAAGGAAAACAGTTTCACAGAAGGCAGTTCATTAGGAAAGTGTTCTTCATCTCACAGTGTTCAGGATAGCTCATCAAGTAGTGTAGTTGGGGGCAGAAAGGCTACTGAATGA 849 0.4276 MDCTPARKTQKADREKLRRDRLNEQFVELGNILDPDRPKNDKATILGDTVQLLRDLTSQVSKLKDEYTMLNEESRELSQEKNDLREEKASLKSDIENLNNQYQLQLRTMYPWPAMDHSVMMAPPSYPYPVPMAVPPGSIPMQPYPYYANQHPAVIPNPCSTYVPFLAPNTIVEQQSTQYVSPPLHPGSRSHVSGKQDSKNKSSRESKAQRNEDSNDVATDLELKTPGSSAEQDLSSAQKKSSKSSRKENSFTEGSSLGKCSSSHSVQDSSSSSVVGGRKATE 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02724 282 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 56 IPR011598 GO:0046983
Tsu02g02724 282 MobiDBLite consensus disorder prediction 177 282 - -
Tsu02g02724 282 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 5 76 IPR036638 GO:0046983
Tsu02g02724 282 MobiDBLite consensus disorder prediction 221 239 - -
Tsu02g02724 282 Coils Coil 53 108 - -
Tsu02g02724 282 PANTHER TRANSCRIPTION FACTOR BHLH121 1 280 IPR044579 GO:0003700|GO:0055072
Tsu02g02724 282 Pfam Helix-loop-helix DNA-binding domain 7 56 IPR011598 GO:0046983
Tsu02g02724 282 MobiDBLite consensus disorder prediction 192 219 - -
Tsu02g02724 282 PANTHER TRANSCRIPTION FACTOR BHLH121 1 280 - -
Tsu02g02724 282 Gene3D - 6 89 IPR036638 GO:0046983
Tsu02g02724 282 MobiDBLite consensus disorder prediction 248 282 - -
Tsu02g02724 282 CDD bHLH_AtILR3_like 11 85 - -
Tsu02g02724 282 SMART finulus 12 62 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02724 Tsu-Chr2 28893813 28897569 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02724 1 279 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G19860 62.500 4.35e-98 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu02g02724 HLH 5.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02724 - - cam:101491902 498.819
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g02724 02 28893813 28897569 Tsu02g02724 02 28893813 28897569 ECH