LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu02g02701	ATGGGTTTGTGttcaattattataaaattcaatGTAGTTATTCTTATTCTTGTTCTATGTTGGAACAAACAAGTTTTTGGTGTGAGTGAGCAAGAAGAGGACAGAGTGTATGAATTACCTGGGCAGCCTTTGGTGAATTTCAAACAATATTCTGGTTATATTACAGTCAATGAAAGTCATGGAAGAGCACTGTTTTATTGGTTCTTTGAATCTTATGATCAACCTCAACAAAAACCTCTTCTTCTTTGGCTCAATGGAGGCCCTGGATGTTCTTCAATTGGTTATGGAGAAGCAGAGGAACTTGGACCCTTCTTTCCCCAAAATAGCACCCAACCTAAGCTCAAGTTGAACCCTTATTCTTGGAATAAAGCTGCAAATCTTTTGTTTCTTGAATCTCCTGTTGGAGTGGGATTTTCCTATACCAATACCACCAGTGATATACAAGAGCTTGGTGACACCATTACTGCTAAGGATTCACACACATTTCTCATCAATTGGTTTAAAAGATTTCCTCAATTCAAATCACATGATTTCTACATTGCTGGTGAAAGCTATGCAGGACACTATGTTCCACAACTTTCTGAGCTTATTTTGGATAACAATCACAATTCTTCTAAGGAAGATTACATCAACTTCAAAGGCATCATGATTGGAAATGCACTATTGGATGATGAAACAGATCAAAAGGGTATGATAGAATATGCATGGGATCATGCTGTTATATCTGATGGTTTATACCATAACATTACAACCATATGCAACTTCAGCCATccaattcaaaatcaaacagaTGATTGCAATACAGAACTTAACAAATACTTTGATGTGTATAAGATTATAGACATGTATAGTTTGTACACTCCCATGTGTTTTAGCAACATCAGCAGCACAAGAAGGGAATCCCCTGTCATCAAAAGCGCGAATCCTCGTTCCCTTTCCAAATTTGACGGATGGCATAGAAATCTAGCAGGATATGATCCATGTGCATCAGATTATACTGCAGCATACCTAAATAGGCCAGAGGTTCAAAAGGCACTACATGCTAATGTCACCAATATTCCATATCCATGGGTTCACTGcagtaataatatatcattttggAATGACGCACCAGTGTCCATGCTTCCCGTCCTTAAGAAACTTATTGCCGGCGGTCTCCGCGTATGGGTTTACAGTGGAGATACAGATGGAAGAATTCCTGTAACTGCAACAAGATACACACTAAACAAATTGGGGCTACCTATAGTTCAAGATTGGACTCCTTGGTATACAAGTCGTCAGgtGGGAGGATGGAACATTGTATATGATGGTCTAACATTTGTGACAATAAGAGGAGCTGGTCACCAAGTTCCTACTTTTACTCCCAAACAAGCACTTCAGCTAGTTCGACATTTCTTAGTCAATAAGAAATTACCACAACATCCTATTTAA	1431	0.3732	MGLCSIIIKFNVVILILVLCWNKQVFGVSEQEEDRVYELPGQPLVNFKQYSGYITVNESHGRALFYWFFESYDQPQQKPLLLWLNGGPGCSSIGYGEAEELGPFFPQNSTQPKLKLNPYSWNKAANLLFLESPVGVGFSYTNTTSDIQELGDTITAKDSHTFLINWFKRFPQFKSHDFYIAGESYAGHYVPQLSELILDNNHNSSKEDYINFKGIMIGNALLDDETDQKGMIEYAWDHAVISDGLYHNITTICNFSHPIQNQTDDCNTELNKYFDVYKIIDMYSLYTPMCFSNISSTRRESPVIKSANPRSLSKFDGWHRNLAGYDPCASDYTAAYLNRPEVQKALHANVTNIPYPWVHCSNNISFWNDAPVSMLPVLKKLIAGGLRVWVYSGDTDGRIPVTATRYTLNKLGLPIVQDWTPWYTSRQVGGWNIVYDGLTFVTIRGAGHQVPTFTPKQALQLVRHFLVNKKLPQHPI	476

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu02g02701	476	Pfam	Serine carboxypeptidase	41	467	IPR001563	GO:0004185\|GO:0006508
	Tsu02g02701	476	ProSitePatterns	Serine carboxypeptidases, histidine active site.	438	455	IPR033124	GO:0004185
	Tsu02g02701	476	PANTHER	SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE	28	475	IPR001563	GO:0004185\|GO:0006508
	Tsu02g02701	476	PRINTS	Carboxypeptidase C serine protease (S10) family signature	130	140	IPR001563	GO:0004185\|GO:0006508
	Tsu02g02701	476	PRINTS	Carboxypeptidase C serine protease (S10) family signature	438	451	IPR001563	GO:0004185\|GO:0006508
	Tsu02g02701	476	PRINTS	Carboxypeptidase C serine protease (S10) family signature	166	191	IPR001563	GO:0004185\|GO:0006508
	Tsu02g02701	476	PRINTS	Carboxypeptidase C serine protease (S10) family signature	117	129	IPR001563	GO:0004185\|GO:0006508
	Tsu02g02701	476	SUPERFAMILY	alpha/beta-Hydrolases	32	473	IPR029058	-
	Tsu02g02701	476	ProSitePatterns	Serine carboxypeptidases, serine active site.	180	187	IPR018202	GO:0004185
	Tsu02g02701	476	Gene3D	-	328	364	-	-
	Tsu02g02701	476	Gene3D	-	374	467	-	-
	Tsu02g02701	476	Gene3D	alpha/beta hydrolase	30	292	IPR029058	-
	Tsu02g02701	476	PANTHER	CARBOXYPEPTIDASE	28	475	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu02g02701	Tsu-Chr2	28573532	28581409	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu02g02701	336	471	Calmodulin-binding Proteins	AT2G22960	29.197	4.53e-16	74.7

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu02g02701	K16297		-	gmx:100781503	818.535