Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02684 ATGGGTAAAGACAAAATTCTTCTTAACATTGCTGTTATCGGCCATGCCGACTCTGGGAAGTCGACTACCACTGGTCACTTGATCTACAAGCTTGGAGGTATCGACAAGCGTGTGGTTGAGAGGGTTGAAAAAGAAGCTATCGATATGAGCAAACATTCTTTTAAGTATGCCTGGCTGCTTGACAAGCTTAAGGCTGAACGTGAAAGAGGTATGACAATCGACATTTCCTTATCGAAGTTTCAGACAGCTAAGTACTACTGCACTGTCATTGATTCCCCCGGACACAGggatttcattaagaacatgaCTACTGGGACTTCTCAAGCAGATTGTGTTGTTCTCATCATTGACTCCACTAATGGTGGTTTTCAAGCTGGTATTTCCAAGGATGGACAGACCCATGAACATGCTCTCCTTGCTTTCACTCTTGGTGTGAAGCAAATGATCTGCTGCTGCAACAAGATGGATGCTACTACACCCAAGTACTCCAAGGGTAGGTATGATGAGATCGTCAATGAACTTGCAGGCTATTTGGAGAATGTTGGCTATAACCCACGTAAAATTCCTTTTGTTCCCATCTCTGGTTTTGAAGGAGATAATTTGATCAATCGGTCGAAAAATCTCGATTGGTACAAGGGCCCAACCCTTCTCGAGGCTATTGACCAAATTAACGAGCCTAAGAGGCCATCAGACAAGCCCCTCCGATTACCACTACAAGATGTTTACAAGATTGGAGGAATTGGAACTTTTCCTGTTGGACGTGTGGAGACTGGTGTCTTAAAACCTGCAATGGCAGTGACTTTTGCACCAACTGGACTTCAAACTGAAGTCAAGTCTGCGGAGATGCATCATGAAGCTCTTACTAAGGCCTTTCCCGGTGACAATGTGGGATTTCATATTAAAGATAATACTTTTAAAGATCTCAAGCGTGGTTATGTTGCCTCAAACTCCAAGGATGACCCAGCCAAGGAGGCTGCTAACTTCACATCTTTAGTAAGCATTATTAATCACCCTGGGCAGATTGGAAATGGTTATGCCCCTGTTCTGAGTTGTCACACCTCACACACTTCTGTCAAATTTTCTGAGCTTGTTTCCAAGATTGACAAGCCTTCTAGTAAGGAAATTGAGAAGGAGCCCAAATTCCTGAAGAATGGTGATTCAGGTATCGTTAAGATGATTCCCACCAAGCCAATGGTGGTTGAGACTTTCTCTGAATATCCTCCACTCGGCAGATTCGCTGTAAGAGACATGCGTCAAACAGTGGCTGTTGGAGTCATCAAGGCTGTAGAGAAGAAGGAAGCAACGTCAGAAGCATTGGAGgctcaaataaataggaaaataaaaaagtttgaggTGGAAAAGCAGAGGATcgagaagaaagaaaatatcttaGCAGACATAGATAAAGTTTGTAGGTGA 1419 0.4172 MGKDKILLNIAVIGHADSGKSTTTGHLIYKLGGIDKRVVERVEKEAIDMSKHSFKYAWLLDKLKAERERGMTIDISLSKFQTAKYYCTVIDSPGHRDFIKNMTTGTSQADCVVLIIDSTNGGFQAGISKDGQTHEHALLAFTLGVKQMICCCNKMDATTPKYSKGRYDEIVNELAGYLENVGYNPRKIPFVPISGFEGDNLINRSKNLDWYKGPTLLEAIDQINEPKRPSDKPLRLPLQDVYKIGGIGTFPVGRVETGVLKPAMAVTFAPTGLQTEVKSAEMHHEALTKAFPGDNVGFHIKDNTFKDLKRGYVASNSKDDPAKEAANFTSLVSIINHPGQIGNGYAPVLSCHTSHTSVKFSELVSKIDKPSSKEIEKEPKFLKNGDSGIVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKAVEKKEATSEALEAQINRKIKKFEVEKQRIEKKENILADIDKVCR 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02684 472 Coils Coil 429 460 - -
Tsu02g02684 472 Pfam Elongation factor Tu domain 2 248 313 IPR004161 GO:0005525
Tsu02g02684 472 Gene3D Translation factors 229 316 - -
Tsu02g02684 472 SUPERFAMILY Translation proteins 226 319 IPR009000 -
Tsu02g02684 472 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 61 76 IPR031157 -
Tsu02g02684 472 PANTHER TRANSLATION FACTOR 1 437 - -
Tsu02g02684 472 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 5 230 IPR000795 GO:0003924|GO:0005525
Tsu02g02684 472 Gene3D - 1 226 IPR027417 -
Tsu02g02684 472 CDD EF1_alpha_II 230 320 - -
Tsu02g02684 472 Pfam Elongation factor Tu C-terminal domain 322 429 IPR004160 -
Tsu02g02684 472 PRINTS GTP-binding elongation factor signature 9 22 IPR000795 GO:0003924|GO:0005525
Tsu02g02684 472 PRINTS GTP-binding elongation factor signature 68 76 IPR000795 GO:0003924|GO:0005525
Tsu02g02684 472 PRINTS GTP-binding elongation factor signature 88 98 IPR000795 GO:0003924|GO:0005525
Tsu02g02684 472 PRINTS GTP-binding elongation factor signature 104 115 IPR000795 GO:0003924|GO:0005525
Tsu02g02684 472 PRINTS GTP-binding elongation factor signature 148 157 IPR000795 GO:0003924|GO:0005525
Tsu02g02684 472 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 249 IPR027417 -
Tsu02g02684 472 PANTHER ELONGATION FACTOR 1-ALPHA-LIKE 1 437 - -
Tsu02g02684 472 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 326 429 IPR009001 -
Tsu02g02684 472 TIGRFAM EF-1_alpha: translation elongation factor EF-1, subunit alpha 1 433 IPR004539 GO:0003746|GO:0005525|GO:0006414
Tsu02g02684 472 CDD EF1_alpha_III 323 426 - -
Tsu02g02684 472 CDD EF1_alpha 9 227 - -
Tsu02g02684 472 Pfam Elongation factor Tu GTP binding domain 7 222 IPR000795 GO:0003924|GO:0005525
Tsu02g02684 472 Gene3D Translation factors 323 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02684 Tsu-Chr2 28380464 28384411 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02684 1 435 Eukaryotic Initiation Factors Gene Family AT5G60390 82.989 0.0 769
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02684 K03231 - gmx:100776330 751.895