Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02679 ATGGCCAAGTCAAGCAAGAAATCCGCCACCAAAGTTGAAGATGCTCCTGTTGTTGTTTCTCCAGCCAAGTCTGGAAAGAAAGGCAAGAGGCAGGCTGAGGAAGAAGCAAAGGCAGTGAGTGCAAAGAAGCAGAAGTTAGAAGAGGTTAAGCAAAAGAAGGAAGTTGAGAAGAAGGTTAAGAAGGAGGAAAGTAGTTCAGAGGATGATTCCTCTGATGATTCTGAGGATGAGAAACCTGTTGCAAAGCCTGCTGCTCCCACAAAAAAGACCCCAGCTAAAAATGGGGATGTGAAGAAAGCTGCCAAGCCAGTTTCTAGTTCCAGCTCAGATGATTCTGATGAGTCTTCTGATGAGGAAGAAGCTAGTGCAAAGAAGCCAACTAAAGTAGAGGCTGCTAAGGTAACTAAGGCGGTGCCAAAGAAGGAGGAAAGTTCTGATGATTCAGAGTCAGATGATGATTCATCTGAAGATGAGAAACCTGCAGCAAAACCTGTTCCTTCTAAAGCTGCGAGTGCCCCTGCAAAGAAAGAAGCTAGTTCTTCTGACGAGTCTTCCGATGAAGActctgatgaagatgaaGATCCAAAGCCGAAGGCTGCCTCTGCTGCAGCCAAGAACGGATCTGTTCCTGCAAAGAAGGCAGCTGAAAGCTCTGAATCTGGTAGCTCAGACTCTGATTCTGATGATGACAAGAACAAGAAAAAACCTGCAACTACTGTTCCCAAAACTGAAAGCTCAGATGATGATTCAAGTGAGGACAGCTCAGATGAAGAGGATACAAAGCCTGCTACAACTCCTAAGCCCGCTGCAGTTGCAAAAAAGAATGAGGAAGATAGCTCTTCTGATGAAGATAGCAGCTCTGATGAAGACACTGAAACCAAAAATTCTAATGGAAACAAGAAACCCGTGGCTGCTGTGAAGAAACAGGATAAAATGGATGTTGATAATGATGAGAGCAGTGATGGTTCTGATGACAGTGAGGAGGAGAGTGAAGAAGAACCTGCAAAAACTCCTCAGAAAAAGGTCAAAGACGTGGAGATGGTTGATGCTAGCAAATCTGCAAAAAAACCTCCTACTACCCCAGCTACACCTGTTAATGGCGGTTCAAAGACATTGTTTGTTGGAAACTTGTCATTCAGTGTGCAGCGAGCTGATATAGAAAATTTCTTCCAAGACTGTGGAGAGGTTGTTGATGTCCGTCTTGCTAATGATGAGGATGGAAGGTTTAAAGGATTTGGACATGTTGAGTTTGCAACTGCAGAGGCAGCCCAAAATGCACTTGAGTTAAATGGCCAAGAGTTGTTGAATCGTGGTGTCCGACTTGATTTAGCTCGGGAGAGGGGGGCTTTTACTCCTAATAATAACAGCAACTACTCAGCCCAAAGCGGTGGAAGAGGCCAAGCTCAAACAATATTTGTCAAGGGTTTTGATACGAATCTAGGGGAGGATGAGGTAATTTTCCCCCATtccttgtttttttattgtcttGCTTCGACTTCATTTGTTTGTAGTTAA 1515 0.4337 MAKSSKKSATKVEDAPVVVSPAKSGKKGKRQAEEEAKAVSAKKQKLEEVKQKKEVEKKVKKEESSSEDDSSDDSEDEKPVAKPAAPTKKTPAKNGDVKKAAKPVSSSSSDDSDESSDEEEASAKKPTKVEAAKVTKAVPKKEESSDDSESDDDSSEDEKPAAKPVPSKAASAPAKKEASSSDESSDEDSDEDEDPKPKAASAAAKNGSVPAKKAAESSESGSSDSDSDDDKNKKKPATTVPKTESSDDDSSEDSSDEEDTKPATTPKPAAVAKKNEEDSSSDEDSSSDEDTETKNSNGNKKPVAAVKKQDKMDVDNDESSDGSDDSEEESEEEPAKTPQKKVKDVEMVDASKSAKKPPTTPATPVNGGSKTLFVGNLSFSVQRADIENFFQDCGEVVDVRLANDEDGRFKGFGHVEFATAEAAQNALELNGQELLNRGVRLDLARERGAFTPNNNSNYSAQSGGRGQAQTIFVKGFDTNLGEDEVIFPHSLFFYCLASTSFVCS 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02679 504 MobiDBLite consensus disorder prediction 118 145 - -
Tsu02g02679 504 MobiDBLite consensus disorder prediction 1 368 - -
Tsu02g02679 504 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 193 485 - -
Tsu02g02679 504 PANTHER BNAA08G02930D PROTEIN 193 485 - -
Tsu02g02679 504 MobiDBLite consensus disorder prediction 333 351 - -
Tsu02g02679 504 Gene3D - 303 457 IPR012677 -
Tsu02g02679 504 MobiDBLite consensus disorder prediction 224 248 - -
Tsu02g02679 504 Coils Coil 29 63 - -
Tsu02g02679 504 MobiDBLite consensus disorder prediction 317 332 - -
Tsu02g02679 504 CDD RRM1_NUCLs 371 447 IPR034349 -
Tsu02g02679 504 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 372 437 IPR000504 GO:0003723
Tsu02g02679 504 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 370 446 IPR000504 GO:0003723
Tsu02g02679 504 SUPERFAMILY RNA-binding domain, RBD 359 467 IPR035979 GO:0003676
Tsu02g02679 504 SMART rrm1_1 371 442 IPR000504 GO:0003723
Tsu02g02679 504 MobiDBLite consensus disorder prediction 26 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02679 Tsu-Chr2 28305492 28310228 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02679 368 434 Eukaryotic Initiation Factors Gene Family AT2G23350 41.176 9.50e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02679 K11294 - gmx:100779929 274.633