Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02678 ATGTACTGGAGGAGAATACAGTGCAGAGATCGGAGATGGGCTTTGTTGTTGCAGCCATCAAAATATATCCTTAGGCCAAAATCATCCGATCATcattgctttcagtctttatCACCAAAGACCACCGTGAAAGAATATTCTTCACATGGTGGTATTATTAGAAGAGATCTTTTAGGTTCAGATTCATCTAGTCATGTTTCATCTAGACATAGTTTTACTGGTCTGAACAGAAGGCCTAGTTTTTGTCTTAGGAGTACTCAGATACACGCTTTTAGTTCTAAAAGCGACGGAAGTAATGCAAGTGAGAATAAACAAGTACATGTTAATGACGGAGCTAATTTTGATAAGGGAAAGAATCAGATAGATAAGTCTGGGGAAGATGTTAAATGCAGCAATGCACATGCACGGCTTGGAGAAATGGATCAAGAGGAATGGCTTAAGAATGAGAAGCTTGCCGTTGAAAGTAAAAGGAAAGAATCACCATTTTTGACTAGAAAAGACAAgtttaaaaatgagtttttgaGAAGAATTGTTCCGTGGGAGAAAATAAACATTTCATGGGACACATTTCCTTATCACATAAATGAGCATACGAAAAATCTTCTGACGGAGTGTGCTGCTTCCCATTTGAGACATAATAAGTTATCTTGTTTTGGCTCTCGCCTTGCATCTTCAAGTGGAAGAATATTGCTTCAGAGCATTCCCGGCACTGAGCTCTATCGCGAGAGAGTAGTTAGAGCTCTTGCACAAGATTTACAAGTTCCGTTGTTGGTGCTTGACAGCAGCATCCTTGCTCCTTATGATCTTGACGATGATCAATCATCCGACTATGAGTCTGATGATTCAGAATCTGGGGAAGAAGGTGCTCTTGATTCAGAGAATGAAGATGATAATGATGCTAGTAATGAAGAAGAGTGGTCTAGCGGTGCTGAAGCGAAGTCAGATCCAAGCGATAATGAAGATGCACTAGCATCTGCTGAAGCAGCCCTTAAGAGAGTGAAAGCAGCTGTTCAGAAACTTGTCCCTTACAATGTTGAAGAACTTGAGAAGATGGTGACTGGTGGAGATGACAGTTCTGAGTCATCGAGTTCTAATAATGCCAAATCTTCCAATAAATCTGAAAGTCAGCTAAGAAAAGGTGACCGTGTGAAGTACACTGGGCCTTCTATTGAATTTAAAGATGATGATAGGGATGTAATTTTAAATAATGGTCAGAGAGGAGAGGTATATGAGGTTAATGGAGATCGAGTTGCTGTCATCTTGGATATTAATGAAGAGAGGGCTAATGAGAGTGAGGTTGAAAACCTTAACAACGATGGTAAAAAACCATCAGTTTATTGGATACATGTTAAGGACATTGAGAATGATCTTGATGCTCAATCACAGGATTGCTACATAGCAATGGAGGCTTTATGTGAGGTTTTGAATTCCAAACAACCTCTTATAGTCTATTTTCCAGATAGTTCACAGTGGTTGCATAAATCAGTTCCTAAGTCAAGCCGGAATGAGTTCTTTAACAAGGTTGAGGAGATTTTTGACCGGTTATCTGGTCCGGTAGTATTGATTTGCGGGCAAAGCAAAGTTCAATCAGGAtcaaaggagaaagaaaaattaACGATGATACTTCCAAACTTCGGACGTGTTACTAAGCTGCCTCTTTCTTTGAAGCACCTGACTGATGGATTCAAAGAGGGAAAGATATCAGAAGATGATGAAATTAACAAGCTCTTCTCGAATGTTTTGAGTGTACATCCACCTAAGGAGGAGAATCTACAGACAGTATTCAAAAAACAACTCGAGGAAGACAGGAAAATTGTGATTTCACGTAGTAATTTGAATGAACTACGAAAGGTTCTTGAAGAAAATCATTTATCATGCATCGACCTCTTGCATGTGAATACCGATGGCAtcattttaacaaaacaaaaagctgaaaaAGTGATAGGCTGGGCAAAAAATCATCACTTATCATCATGCTTGCATCCTTCTATTAAAGGAGAAAAATTGTGCATACCTCGCGAAAGTCTTGAAATTGCAATCTCAAGGATGAAAGACATGGAAACTATGTCAAGAAAACCTTCTCAGAACCTCAAGAACCTTGCGAAGGATGAGTTCGAGAGCAATTTCATTTCATCTGTTGTAGCTCCTGGTGAAATAGGTGTACAGTTTGATGACATAGGTGCTCTTGAAGATGTTAAGAAGGCACTTCAGGAACTTGTTATTCTTCCAATGAGAAGGCCTGAGCTTTTCTCTCATGGAAACCTGTTGCGGCCCTGCAAAGGAATATTACTCTTTGGTCCTCCTGGAACCGGGAAAACCCTTCTGGCCAAGGCACTTGCGACAGAAGCTGGTGCAAATTTTATCAGCATAACTGGTTCGACCCTTACGTCAAAGTGGTTTGGAGATGCTGAGAAACTAACCAAAGCGCTTTTCTCATTTGCCAGCAAGCTTGCACCTGTCATTATATTTGTTGATGAAGTTGACAGCTTGCTTGGTGCTCGAGGTGGTGCTTTTGAGCATGAGGCCACTAGAAGAATGAGGAACGAGTTCATGGCGGCGTGGGATGGATTGAGGTCAAAAGAAAATCAGAGAATCCTCATTCTTGGAGCAACAAACCGGCCATTTGACCTTGATGATGCTGTTATTCGTCGTTTACCAAGAAGGATATATGTTGATTTACCAGATGCTGAAAATCGAAAGAAGATTCTAAGAATATTTCTTGCAAAAGAAAATCTGAATTCTGATTTTCAGTATGACAAACTTGCTAACTTGACTGAAGGCTACTCTGGTAGTGATTTGAAGAACCTCTGTGTTGCTGCAGCATATAGACCAGTTCAAGAGCtcttagaagaagaaaagaagAGAGTCGATGGTACCACAACTTCAGTATTAAGGCCTCTAAATTTGGATGATTTTGTACAAGCAAAATCCaagGTGGGTCCATCTGTTGCGTATGATGCAACAAGCATGAATGAGCTAAGGAAGTGGAATGAAATGTACGGTGAAGGCGGTAGTAGAACAAAATCACCATTCGGATTCGGGAACCGATCTTGA 3054 0.3926 MYWRRIQCRDRRWALLLQPSKYILRPKSSDHHCFQSLSPKTTVKEYSSHGGIIRRDLLGSDSSSHVSSRHSFTGLNRRPSFCLRSTQIHAFSSKSDGSNASENKQVHVNDGANFDKGKNQIDKSGEDVKCSNAHARLGEMDQEEWLKNEKLAVESKRKESPFLTRKDKFKNEFLRRIVPWEKINISWDTFPYHINEHTKNLLTECAASHLRHNKLSCFGSRLASSSGRILLQSIPGTELYRERVVRALAQDLQVPLLVLDSSILAPYDLDDDQSSDYESDDSESGEEGALDSENEDDNDASNEEEWSSGAEAKSDPSDNEDALASAEAALKRVKAAVQKLVPYNVEELEKMVTGGDDSSESSSSNNAKSSNKSESQLRKGDRVKYTGPSIEFKDDDRDVILNNGQRGEVYEVNGDRVAVILDINEERANESEVENLNNDGKKPSVYWIHVKDIENDLDAQSQDCYIAMEALCEVLNSKQPLIVYFPDSSQWLHKSVPKSSRNEFFNKVEEIFDRLSGPVVLICGQSKVQSGSKEKEKLTMILPNFGRVTKLPLSLKHLTDGFKEGKISEDDEINKLFSNVLSVHPPKEENLQTVFKKQLEEDRKIVISRSNLNELRKVLEENHLSCIDLLHVNTDGIILTKQKAEKVIGWAKNHHLSSCLHPSIKGEKLCIPRESLEIAISRMKDMETMSRKPSQNLKNLAKDEFESNFISSVVAPGEIGVQFDDIGALEDVKKALQELVILPMRRPELFSHGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMAAWDGLRSKENQRILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRKKILRIFLAKENLNSDFQYDKLANLTEGYSGSDLKNLCVAAAYRPVQELLEEEKKRVDGTTTSVLRPLNLDDFVQAKSKVGPSVAYDATSMNELRKWNEMYGEGGSRTKSPFGFGNRS 1017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02678 1017 MobiDBLite consensus disorder prediction 306 320 - -
Tsu02g02678 1017 MobiDBLite consensus disorder prediction 92 125 - -
Tsu02g02678 1017 MobiDBLite consensus disorder prediction 374 390 - -
Tsu02g02678 1017 ProSitePatterns AAA-protein family signature. 865 884 IPR003960 GO:0005524|GO:0016887
Tsu02g02678 1017 MobiDBLite consensus disorder prediction 92 108 - -
Tsu02g02678 1017 Gene3D - 721 997 IPR027417 -
Tsu02g02678 1017 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 4 1013 - -
Tsu02g02678 1017 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 4 1013 - -
Tsu02g02678 1017 Gene3D - 894 979 - -
Tsu02g02678 1017 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 722 984 IPR027417 -
Tsu02g02678 1017 Pfam ATPase family associated with various cellular activities (AAA) 762 892 IPR003959 GO:0005524|GO:0016887
Tsu02g02678 1017 MobiDBLite consensus disorder prediction 271 304 - -
Tsu02g02678 1017 CDD AAA 727 893 - -
Tsu02g02678 1017 MobiDBLite consensus disorder prediction 269 323 - -
Tsu02g02678 1017 SMART AAA_5 758 895 IPR003593 -
Tsu02g02678 1017 Pfam AAA+ lid domain 915 951 IPR041569 -
Tsu02g02678 1017 MobiDBLite consensus disorder prediction 352 390 - -
Tsu02g02678 1017 MobiDBLite consensus disorder prediction 355 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02678 Tsu-Chr2 28273139 28294624 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02678 721 953 Calmodulin-binding Proteins AT3G56690 38.983 6.94e-42 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02678 - - gmx:100812718 1612.05