LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu02g02646	ATGGCAAAGCTCAACGCTGTGTTGACGGTGAAGCTCGATGAGGGAAGGTCAGATCTGATCGGTCGAAGCAACTGTGGCATGATGGCAACGTCAACATCACAGTTGAGGTTAGAGCTACGTTGGTTTTTCATCGGAGAGGTTTTCGTCACCGCACGAACACGAGCTTTAGCACTACCAGCAATGgCTCCCAAAAAAGGTGTTAAAGCTCCAGTTGCAGCTTCTAAGAAGAAGCCAGAGAAGGTTACAAACCCGCTATTCGAGAAGCGTCCAAAGCAGTTTGGAATTGGAGGTGCATTGCCGCCGAAGAGGGATTTGACTAGATTCGTGAAATGGCCTAAGACTGTTCAGATTCAGAGGAAGAAGAGAATTTTGAAGCAAAGGTTGAAGGTTCCACCAGCTTTGAACCAGTTCACCAAAACCCTTGACAAAAACCTAGCCACAAGTTTGTTCAAGATACTTCTGAAGTATAGGCCTGAGGATAAGGCAGAAAAGAAGGAGAGGCTATTGAAAAGAGCTCAAGCAGAGGCTGAGGGCAAAACAGTTGAAACTAAGAAGCCCATTAATGTGAAATTTGGTCTCAAACATGTTACCTGGCTTATTGAGCAGAACAAAGCCCAGCTTGTTGTGATTGCTCACGATGTCGACCCAATTGAATTGGTTGTCTGGCTTCCAGCATTGTGCAGGAAGATGGAAATTCCATACTGTATTGTCAAGGGCAAGGCCCGTCTTGGAACTGTTGTCCACAAGAAAACTGCATCTGTTTTGTGCTTGACAACTGTTAAAAATGAAGATAAAATGGAGTTCAGCAGGGTCCTAGAGGCGATCAAGGCAAACTTCAACGACAAATATGATGAGTACAGGAAGAGGTGGGGTGGTGGAATCATGGGTTCCAAATCCCAAGCCAAAACCAAGGCGAAGGAAAGGCTCATTGCCAAGGAGGCTGCTCAGAGGATGACTTAG	960	0.4583	MAKLNAVLTVKLDEGRSDLIGRSNCGMMATSTSQLRLELRWFFIGEVFVTARTRALALPAMAPKKGVKAPVAASKKKPEKVTNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKTVQIQRKKRILKQRLKVPPALNQFTKTLDKNLATSLFKILLKYRPEDKAEKKERLLKRAQAEAEGKTVETKKPINVKFGLKHVTWLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARLGTVVHKKTASVLCLTTVKNEDKMEFSRVLEAIKANFNDKYDEYRKRWGGGIMGSKSQAKTKAKERLIAKEAAQRMT	319

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu02g02646	319	ProSitePatterns	Ribosomal protein L7Ae signature.	227	244	IPR004037	GO:0042254\|GO:1990904
	Tsu02g02646	319	Coils	Coil	162	182	-	-
	Tsu02g02646	319	SUPERFAMILY	L30e-like	149	290	IPR029064	-
	Tsu02g02646	319	Pfam	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family	176	267	IPR004038	-
	Tsu02g02646	319	PRINTS	Ribosomal protein L7A/RS6 family signature	234	248	IPR018492	-
	Tsu02g02646	319	PRINTS	Ribosomal protein L7A/RS6 family signature	189	203	IPR018492	-
	Tsu02g02646	319	PRINTS	Ribosomal protein L7A/RS6 family signature	224	234	IPR018492	-
	Tsu02g02646	319	PRINTS	Ribosomal protein L7A/RS6 family signature	208	221	IPR018492	-
	Tsu02g02646	319	PANTHER	RIBOSOMAL PROTEIN L7AE FAMILY MEMBER	39	317	-	-
	Tsu02g02646	319	Gene3D	-	111	294	IPR029064	-
	Tsu02g02646	319	PANTHER	BNAA03G47020D PROTEIN	39	317	-	-
	Tsu02g02646	319	PRINTS	Ribosomal protein L7A family signature	127	146	IPR001921	-
	Tsu02g02646	319	PRINTS	Ribosomal protein L7A family signature	185	205	IPR001921	-
	Tsu02g02646	319	PRINTS	Ribosomal protein L7A family signature	151	164	IPR001921	-
	Tsu02g02646	319	PRINTS	Ribosomal protein L7A family signature	90	107	IPR001921	-
	Tsu02g02646	319	PRINTS	Ribosomal protein L7A family signature	278	298	IPR001921	-
	Tsu02g02646	319	PRINTS	Ribosomal protein L7A family signature	107	124	IPR001921	-
	Tsu02g02646	319	PRINTS	Ribosomal protein L7A family signature	246	270	IPR001921	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu02g02646	Tsu-Chr2	27633841	27636262	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu02g02646	61	319	Cytoplasmic Ribosomal Protein Gene Family	AT3G62870	85.714	2.72e-167	463

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu02g02646	K02936		-	gmx:100792324	465.307