Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02644 ATGAGTTCTCGGACTGGTAGGATAACTCCTGTCAGAGGTTACACCCGGCGGAGGAAGGTAGGGTTGGACCTTGACCTTAACTTACCGGCTGGCGAGCATCCGTTTGCTGAGAATCCGGCTGGTGAAAATCGCGAGCAGGAGGGACCTTCGATTCAGTTGGGGCTTCAAGAAGTAGAAGTTCAAGCTAACCCACAACAGCCCATTGTACTTGTAGAAGCTCCTATGATTGATGTGGAggaaattgatgatgatgatgttattgaATCTTCCCCGAGGGCTTTTGCTGAGGCTAAAAACAATTCTAGAAGAAATCGCGGGAGGACTATAGTTGATGTGGATTTAGAAGAGCAGACTAGGATAAGCAACAGTAATCGCTACAAACGCAGAAGAGAACctccaaatcaaacaattatcAATTGTGATCTTTATATAAATTTGGAAGGCAGTAGCAGCTCTACGCAGATGGAAACTGTCAAAAAGCCACCTGAGCCTCCAAAGGAACCTGTCTTCAGCTGTCCTATATGCATGGGCCCTTTGGTCGAAGAAATGTCGACAAGGTGTGGTCATATATTTTGCAAGGCTTGTATCAAGGCTGCTATAAGTGCTCAGGCTAAATGTCCTACCTGTAGAAAAAAGATTACTGTGAAAGAGCTTATAAGGGTGTTTCTCCCAACAACTGGTTAA 684 0.4269 MSSRTGRITPVRGYTRRRKVGLDLDLNLPAGEHPFAENPAGENREQEGPSIQLGLQEVEVQANPQQPIVLVEAPMIDVEEIDDDDVIESSPRAFAEAKNNSRRNRGRTIVDVDLEEQTRISNSNRYKRRREPPNQTIINCDLYINLEGSSSSTQMETVKKPPEPPKEPVFSCPICMGPLVEEMSTRCGHIFCKACIKAAISAQAKCPTCRKKITVKELIRVFLPTTG 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02644 227 MobiDBLite consensus disorder prediction 25 48 - -
Tsu02g02644 227 Pfam Zinc finger, C3HC4 type (RING finger) 172 209 - -
Tsu02g02644 227 PANTHER ELFLESS, ISOFORM B 12 226 - -
Tsu02g02644 227 SMART ring_2 172 209 IPR001841 -
Tsu02g02644 227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 144 225 IPR013083 -
Tsu02g02644 227 ProSiteProfiles Zinc finger RING-type profile. 172 210 IPR001841 -
Tsu02g02644 227 PANTHER RING ZINC FINGER-RELATED 12 226 - -
Tsu02g02644 227 ProSitePatterns Zinc finger RING-type signature. 187 196 IPR017907 -
Tsu02g02644 227 SUPERFAMILY RING/U-box 171 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02644 Tsu-Chr2 27622979 27627375 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02644 16 226 C3H Transcription Factor Family AT5G48655 48.826 6.27e-47 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02644 K22651 - jre:109013825 265.003