Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02642 ATGGTAGTAGTGATCATGCAagagcaacaacaacaacatcatcatcaacagtTGCCACAACTCACCACCAATCACCAATCCTCAACAACCGTCACCTCCCTTAGGTCACCGTCCTCCGCCACCGCCACCTCCCTTTGTTCGCCTCTTCATATTTCTTCCCACCGCCAACCCTTACTTCCTCCACCGGTCGCGGTGGTTCTCCCGTCCGGGGAGCCAATTTCAACGGCACCACTGAATTTTGAGTTGGCGAGAGTTCGCCTGTCGGACATTGGTCCTTATGACGGTGCACCGGCAGGGACTTATGTTAGGGCAATGGAAACACTGTGTTCTTCTCTGTTGAAGTACAATGCGGCGTTGATTGAATTAGGGAGTGAAGATACTGCTCTTATGCGATGTGGATTGGAAGGTGCTAGATTGTTCTTTAGGAGTAGAGCACATCTTGGTGTTGGAAAGGGAAGCCGTGGAGTTTACATGTATAGGGCAGGAAgAGCTTTGGAGGATTGGGATTCGTCTCCTCCTTGCATGGCTGATATTTTTAGGTGCATGGGAAAGGCTTCCCGTGTTGCTTTATCGGCCATTGCAAGGCATCTGCGCCTAAGAAGCGATGTTTTTAACCAACTGCTTGATGATGCTCCATTGCCTGCTAACGAGGTGTCTTCTTCTGTTCTTGTTGGGACATACTCGCATGCTTCTTTACAAAATGGAAAAGGTGCCATTGGAGGCGGTAAGCCTACCGTCAATGGTGAAGTTGAGAAGGGGTTGTTGACCTTGATATCTTCTGACACTCCTGGTCTTCAGGTATGTGACCCCAATGGCCGCTGGTATCTGGCAGACAGTGGGTCTGGGCCTGGAGATCTTTTACTGATAACAGGCCGGGCGCTTAGCCATGCTACTGCAGGCCTACATCCAGCCGCATCATATAGAGCTTCTCCAGATTGTTTTACGAGTCCCAATAGTGGAGGAAGGACTTCACTTGCATATAGACTCATGCCACAGGGCAATGCTATATTAGATTGTTCTCCAATTGCAGCAGCTGGTCATGTTATTGCTCAAAGCTATGTTCCAATATCTGTAAGCCAATTTATGGATGACCTTGCTGCTGAAGAACTGATAGGCAGCAGATGTGATAATGATGACGTTGCTCAAAGCAATGTGAACAAGGACCCATCATTAAGAAGTGTTCTATCAGATCCTTTGTCTGGCTCATTTCTTGAAGATGCAATGCTTGTCTCATGTGGACATTCTTTTGGTGGTCTCACACTGAGGAGAGTCATTGAAACATCAAGATGCACCCTCTGCAATGTTGATATTGAAACCGGCTCTCTGATCCCTAATCTTGCTCTTAGAGCTGCAGCTGCTGCTGTCAAGCATGAGGATGATCGAAGGTTATTTCGTAATGCTGCTCTCCGAAAGCGGCGGAAAGAAATGGGTGAACCAATGGATCCAATCAGAAGAGTGAACAGGGAAAATGGAGATTTTACTTCTGCTGATGGACTCCAACGGGGAGTACAATATCCATTTTCAGTAAATGAGAAAGTTATTATCAAGGGTAACAGGAGAACACCCGAAAAATTTGTTGGGAAAGAAGCTATCATTACGTCTCAGTGTCTCAATGGCTGGTATTTGCTCAAGATTATTGGATCTGGAGAGAATGTCCGCCTGCAGTATCGTTCTCTCAGGAAGCTCTTAAACACACCAACAATGGAAGACCAGTGTCAGTTGCAGCCAATTCAAAATAGCAGCTcttag 1749 0.4591 MVVVIMQEQQQQHHHQQLPQLTTNHQSSTTVTSLRSPSSATATSLCSPLHISSHRQPLLPPPVAVVLPSGEPISTAPLNFELARVRLSDIGPYDGAPAGTYVRAMETLCSSLLKYNAALIELGSEDTALMRCGLEGARLFFRSRAHLGVGKGSRGVYMYRAGRALEDWDSSPPCMADIFRCMGKASRVALSAIARHLRLRSDVFNQLLDDAPLPANEVSSSVLVGTYSHASLQNGKGAIGGGKPTVNGEVEKGLLTLISSDTPGLQVCDPNGRWYLADSGSGPGDLLLITGRALSHATAGLHPAASYRASPDCFTSPNSGGRTSLAYRLMPQGNAILDCSPIAAAGHVIAQSYVPISVSQFMDDLAAEELIGSRCDNDDVAQSNVNKDPSLRSVLSDPLSGSFLEDAMLVSCGHSFGGLTLRRVIETSRCTLCNVDIETGSLIPNLALRAAAAAVKHEDDRRLFRNAALRKRRKEMGEPMDPIRRVNRENGDFTSADGLQRGVQYPFSVNEKVIIKGNRRTPEKFVGKEAIITSQCLNGWYLLKIIGSGENVRLQYRSLRKLLNTPTMEDQCQLQPIQNSSS 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02642 582 MobiDBLite consensus disorder prediction 8 39 - -
Tsu02g02642 582 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 76 580 - -
Tsu02g02642 582 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 389 459 IPR013083 -
Tsu02g02642 582 Gene3D - 155 370 IPR027443 -
Tsu02g02642 582 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 76 580 - -
Tsu02g02642 582 SUPERFAMILY Clavaminate synthase-like 172 341 - -
Tsu02g02642 582 SUPERFAMILY RING/U-box 391 457 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02642 Tsu-Chr2 27589923 27602052 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02642 391 569 Plant U-box Gene Family AT5G05230 40.884 5.39e-38 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02642 - - adu:107477161 910.212