Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02622 ATGGAgaaattctcattctcattctcGTTTATCTTTTTCATCACATTTCtactttgtttcttcttttcttttcaacaaGTTAGATCAcaaagtgatgatgatgattcacaATCACTTCTTGCACTAAAATCTTCCATTGACATTCACAACAAACTTCCGTGGCCGGTGAAACAAAACGACGACGTTTGCACTTGGGAAGGAGTTAAAGAATGTTTCAAAGGAAAAGTTAGAAAGCTAGTACTCGAATATTTCAACTTAACTGGAACATTAGATTCAAAAATCTTGAGTCGTTTGGATCAACTTCGAGTTCTTAGTTTCAAAGGAAATTCACTTTCTGGTCAAATCCCTAATCTCTCAAATCTCGTCAATCTCAAATCTATTTATCTTAATGATAATAACTTCTCCGGCGAGTTTCCGGCTTCTGTTTCGGTTCTTCGCCGTGTTAAGGTTATTGTTCTGTCTGGTAATAGAATCTCCGGCGAGATTCCGGCGTCGTTGGTTAAGGTTCCTCGGCTCTATGTTCTCTATTTGCAAGATAACTTGTTTACTGGTTCGATTCCTGGTTTTAATCAAATCGGACTTAAGTACTTGAATGTCTCTAATAATAAACTCTCCGGCGAGATTCCGGTGACAACTGCATTGAGCCGGTTTAATGCGTCGTCGTTTTCAGGGAACTTAGAGCTATGCGGAGAACAGATCCACAAAAAATGCAGAAGTAGCAATCTGTTTCCGCCGATGGTAGCGCCGTCACCGTCGGTTGGTTCCGTTGGAGTGAACACGAAAACGACGTCGTCGAAATCGAACCGTACGAAACTGATAAAGATAATTGGAGGGAGTGTTAGTGGATttgtattgttgttaattttgttaatgATACTTGTGTTGGTAATTCGCAAGAACCGTAGGAAAAGGGTGGGATCCTCTGCAGCAAGGAGAGGGAAAAGTGCTGACTTGGCAGCAGGAGAAGGAGAAAATGATGGAGGTGGAGAGGGTAGAGGAAGTAATTATGAAGCAAAACAAGGAGGATTTGCTTGGGAAAATGAGGGTATAGGGAAATTGGTGTTCTGCGGAGCAGGGGATCGAGAAATGGGTTATAGTTTAGAGGATTTACTTAAGGCTTCTGCTGAGACATTAGGGAGGGGTATAATGGGAAGTACATATAAAGCAGTTATGGAATCAGGTTTTATTGTTACGGTTAAGAGGTTGAAAGATGCTAGGTACCCTGGTTTAGAGGAGTTTAGGGCACATATAGACTTACTTGGTAAGCTTAGACATCCTAATTTGGTCCCACTTAGGGCTTACTTTCAAGCTAAAGAAGAACGTCTTCTTGTTTATGACTATTTTCCCAATGGAAGCCTCTTCTCTCTTGTTCATGGATCAAAAACATCTAGCGGTGGAAAACCTCTTCACTGGACATCATGTCTTAAAATTGCAGAAGATCTAGCAACAGGCCTTCTCTATATCCACCAAAATCCCGGCATGACTCATGGAAACCTGAAATCTTCTAATGTGTTACTTGGTTCTGACTTCGAGTCGTGTCTCACCGATTACGGTCTCACTGTGTTCCTCAATCCTGACACAATGGAAGAACCAAGTGCCACTTCTTTTTTCTATAGAGCGCCCGAGTGCCGCAGTTTTCAGCGGCCACAAACTCAACCTGCCGATGTATACAGTTTTGGTGTTCTTCTCCTAGAGCTTTTAACGGGAAAAACACCCTACCAAGACCTTGTTCAGACACACGGTTCAGATATACCTAAATGGGTTCGGTCAGTGCGTGAAGAAGAAACTGAATCTGGTGACGATCCTGCCTCGTCAGGCAATGAAGCATCTGAAGAGAAGCTTCAGGCTCTATTAAACATTGCAATGGCATGTGTTTCAGTTGTGCCGGAGAATAGGCCTACAATGAGAGAAGTTCTAAAGATGATAAGAGATTCAAGAGGAGAAGCTCATGTCTCATCTAATAATAGTAGTGATCATTCACCTGGTAGATGGTCAGATACAGTTCAAAGCTTGCCAAGGGATGAACATCTTAGCATAtaa 2040 0.4039 MEKFSFSFSFIFFITFLLCFFFSFQQVRSQSDDDDSQSLLALKSSIDIHNKLPWPVKQNDDVCTWEGVKECFKGKVRKLVLEYFNLTGTLDSKILSRLDQLRVLSFKGNSLSGQIPNLSNLVNLKSIYLNDNNFSGEFPASVSVLRRVKVIVLSGNRISGEIPASLVKVPRLYVLYLQDNLFTGSIPGFNQIGLKYLNVSNNKLSGEIPVTTALSRFNASSFSGNLELCGEQIHKKCRSSNLFPPMVAPSPSVGSVGVNTKTTSSKSNRTKLIKIIGGSVSGFVLLLILLMILVLVIRKNRRKRVGSSAARRGKSADLAAGEGENDGGGEGRGSNYEAKQGGFAWENEGIGKLVFCGAGDREMGYSLEDLLKASAETLGRGIMGSTYKAVMESGFIVTVKRLKDARYPGLEEFRAHIDLLGKLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLVHGSKTSSGGKPLHWTSCLKIAEDLATGLLYIHQNPGMTHGNLKSSNVLLGSDFESCLTDYGLTVFLNPDTMEEPSATSFFYRAPECRSFQRPQTQPADVYSFGVLLLELLTGKTPYQDLVQTHGSDIPKWVRSVREEETESGDDPASSGNEASEEKLQALLNIAMACVSVVPENRPTMREVLKMIRDSRGEAHVSSNNSSDHSPGRWSDTVQSLPRDEHLSI 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02622 679 Gene3D Ribonuclease Inhibitor 192 241 IPR032675 -
Tsu02g02622 679 MobiDBLite consensus disorder prediction 587 610 - -
Tsu02g02622 679 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 34 667 - -
Tsu02g02622 679 MobiDBLite consensus disorder prediction 648 679 - -
Tsu02g02622 679 Pfam Protein kinase domain 375 640 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g02622 679 ProSiteProfiles Protein kinase domain profile. 372 651 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g02622 679 Gene3D Ribonuclease Inhibitor 32 191 IPR032675 -
Tsu02g02622 679 SUPERFAMILY L domain-like 32 230 - -
Tsu02g02622 679 PANTHER INACTIVE LEUCINE-RICH REPEAT RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE 34 667 - -
Tsu02g02622 679 Gene3D Phosphorylase Kinase; domain 1 358 447 - -
Tsu02g02622 679 SUPERFAMILY Protein kinase-like (PK-like) 376 650 IPR011009 -
Tsu02g02622 679 MobiDBLite consensus disorder prediction 306 333 - -
Tsu02g02622 679 MobiDBLite consensus disorder prediction 646 679 - -
Tsu02g02622 679 Pfam Leucine rich repeat N-terminal domain 33 68 IPR013210 -
Tsu02g02622 679 Gene3D Transferase(Phosphotransferase) domain 1 448 666 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02622 Tsu-Chr2 27370398 27376205 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02622 7 679 Receptor kinase-like Gene Family AT1G60630 60.561 0.0 771
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Tsu02g02622 Pkinase 2.7e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02622 - - lja:Lj3g3v3500180.1 991.875