Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02613 ATGTTACTCATCCCCATATCATTGTTACCACAAGATTcacattcattcatttatttgatttgtataTCGGCATTGGTCGCAGTGTACATATGTATAAAGGTTTTTAGAACATTTAGTAAAGTTGAGGATTTACCCGATACGATCGAGGTACAAGAGATAGATGAAAGGAGACAATTTCATGAAGCGAGAGAGTTTTATCAATCAATTGCTCGTAATAATACATGGTCTACGAGGCAACATTACATACCCGATTCTCAAATCAATATGTCTTTTGGCACAATTGCGGAGATCGCAAGATGGGCTATGAGAGCATTGCCGCCGGTTAGAAGTTTTAATGGTAGCGGAAATATGGATTGTCCTATTTGTATAGAAGAATTTGAGAAAAGAGAATTGATTCAATCTTTTGGAGTGTGTGGCCATGAATTTCATACATCCTGTCTCAATTCTTGGTTACTAGGTGGAAAAACTACTTGTCCAGTTTGTCGCCTAGATTTGTCATCAAGCACTTAG 510 0.3608 MLLIPISLLPQDSHSFIYLICISALVAVYICIKVFRTFSKVEDLPDTIEVQEIDERRQFHEAREFYQSIARNNTWSTRQHYIPDSQINMSFGTIAEIARWAMRALPPVRSFNGSGNMDCPICIEEFEKRELIQSFGVCGHEFHTSCLNSWLLGGKTTCPVCRLDLSSST 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02613 169 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 53 166 - -
Tsu02g02613 169 PANTHER OS06G0666500 PROTEIN 53 166 - -
Tsu02g02613 169 CDD RING-H2 119 162 - -
Tsu02g02613 169 ProSiteProfiles Zinc finger RING-type profile. 119 162 IPR001841 -
Tsu02g02613 169 Pfam Ring finger domain 118 162 IPR001841 -
Tsu02g02613 169 SMART ring_2 119 161 IPR001841 -
Tsu02g02613 169 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 104 168 IPR013083 -
Tsu02g02613 169 SUPERFAMILY RING/U-box 113 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02613 Tsu-Chr2 27261536 27262045 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02613 82 167 C3H Transcription Factor Family AT5G41450 33.721 1.26e-10 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02613 - K10664 mtr:MTR_4g073810 174.866