Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02609 ATGGGTTCGAAACTAACAGGGAAGGTGAAATGGTTCAATGATCAGAAGGGGTTTGGTTTCATCACCCCTGATGATGGTTCTGAGGAGCTTTTCGTTCATCAATCTCAGATCCAGACTGACGGTTTCCGTAGCCTTGCTGAAGGAGAGTCTGTTGAGTATCAGATCGAATCTGATAACGACGGACGATCTAAGGCTGTGAATGTTACTGGACCTGATGGTGCTAATGTTCAAGGAACCAGACGCGGTGGTGGTGGCGGCGGTGGTTATGAGCGTGGTGGTGGAGGCTATGGCGGTGGTGGATACGGTGGTGGAGGCGGTGGatatggtggtggtggaggCTATGGTGGTGGAAGAGGCGGAGGAGGCTATGGTGGTGGCGGAGGAGGCTATGGTGGTGGAGGTCGCGGTGGTGGACGTGGTGGAGGCGGCGGTGGCTGCTATAACTGTGGTGAATCTGGACACATGGCTAGGGATTGCAGCAGCGGTGGAAGCGGCGGTGGAGGAGGTGGCAGGTATGGTGGAAGCGGTGGAGGAGGTGGCGGCGGTGGAAGCTGCTACAGCTGTGGTGAATCTGGTCACTTTGCCAGAGATTGCCCAACAAGTGCTCGTTAG 612 0.5441 MGSKLTGKVKWFNDQKGFGFITPDDGSEELFVHQSQIQTDGFRSLAEGESVEYQIESDNDGRSKAVNVTGPDGANVQGTRRGGGGGGGYERGGGGYGGGGYGGGGGGYGGGGGYGGGRGGGGYGGGGGGYGGGGRGGGRGGGGGGCYNCGESGHMARDCSSGGSGGGGGGRYGGSGGGGGGGGSCYSCGESGHFARDCPTSAR 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02609 203 Pfam 'Cold-shock' DNA-binding domain 6 70 IPR002059 GO:0003676
Tsu02g02609 203 PANTHER COLD SHOCK PROTEIN 2 1 113 - -
Tsu02g02609 203 Gene3D - 180 203 - -
Tsu02g02609 203 Gene3D - 135 168 - -
Tsu02g02609 203 Pfam Zinc knuckle 145 160 IPR001878 GO:0003676|GO:0008270
Tsu02g02609 203 Pfam Zinc knuckle 184 199 IPR001878 GO:0003676|GO:0008270
Tsu02g02609 203 ProSitePatterns Cold-shock (CSD) domain signature. 18 37 IPR019844 -
Tsu02g02609 203 SMART csp_8 6 71 IPR011129 GO:0003676
Tsu02g02609 203 MobiDBLite consensus disorder prediction 158 181 - -
Tsu02g02609 203 MobiDBLite consensus disorder prediction 60 74 - -
Tsu02g02609 203 Gene3D - 2 82 IPR012340 -
Tsu02g02609 203 ProSiteProfiles Zinc finger CCHC-type profile. 185 199 IPR001878 GO:0003676|GO:0008270
Tsu02g02609 203 SMART c2hcfinal6 145 161 IPR001878 GO:0003676|GO:0008270
Tsu02g02609 203 SMART c2hcfinal6 184 200 IPR001878 GO:0003676|GO:0008270
Tsu02g02609 203 PANTHER COLD SHOCK DOMAIN PROTEIN 2 1 113 - -
Tsu02g02609 203 PRINTS Cold shock protein signature 7 22 IPR002059 GO:0003676
Tsu02g02609 203 PRINTS Cold shock protein signature 43 61 IPR002059 GO:0003676
Tsu02g02609 203 PRINTS Cold shock protein signature 28 37 IPR002059 GO:0003676
Tsu02g02609 203 ProSiteProfiles Cold-shock (CSD) domain profile. 4 70 IPR002059 GO:0003676
Tsu02g02609 203 SUPERFAMILY Retrovirus zinc finger-like domains 138 201 IPR036875 GO:0003676|GO:0008270
Tsu02g02609 203 CDD CSP_CDS 6 70 IPR002059 GO:0003676
Tsu02g02609 203 MobiDBLite consensus disorder prediction 57 87 - -
Tsu02g02609 203 ProSiteProfiles Zinc finger CCHC-type profile. 146 159 IPR001878 GO:0003676|GO:0008270
Tsu02g02609 203 SUPERFAMILY Nucleic acid-binding proteins 4 70 IPR012340 -
Tsu02g02609 203 PANTHER COLD SHOCK PROTEIN 2 117 203 - -
Tsu02g02609 203 PANTHER COLD SHOCK DOMAIN PROTEIN 2 117 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02609 Tsu-Chr2 27215463 27216907 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Tsu02g02609 CSD 4.2e-28 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02609 - - cam:101490833 197.208