Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02597 ATGCGCAGAGAGATCGCCTTTCTCGCTCAACCgcgattcattcttctcttcctTGTTCTTTCAATTTTCCTCATTTTCGCCTTTTCTACTTCTAAACGGGCCGATGAGATAGCAGAAGAGGAGCCCGAAATTACACATAGAGTTTTCTTGgatattgatattgataaaCAGCGTTTAGGTAGGATCGTGATTGGATTATATGGCCAAGTGGTACCAAAAACTGTGGAAAATTTTAGAGCTTTGTGCACAGGGGAGAAAGGCGAGAGTGCAAGTGGTGTAAAACTTCATTACAAGGGAACACCATTTCATCGGATAGTATCTGGTTTTGTGATTCAGGGTGGAGATATTGTTCATCATGATGGAAAAGCATCCGAATCTATATATGGTGGCACCTTTCCTGACGAGAATTTCAGGATTAAACATTCTCATGCTGGCGTTGTTTCTATGGCGAATTCGGGACCTGATTCCAATGGTTCACAGTTTTTCTTCACCACAGTGAAAGCCAGTTGGTTGGATGGAGACCATGTTGTTTTTGGCAAGGTTGTTCAAGGCATGGATACCGTGTTTGCAATTGAAGGAGGAGCTGGAACCTACAGTGGAAAACCGAGGAAAAAGGTAGTGATTGCGGACTCTGGGGAGATACCGAAGAGCCGGTGGGACGAGGAAAGTTAA 672 0.4196 MRREIAFLAQPRFILLFLVLSIFLIFAFSTSKRADEIAEEEPEITHRVFLDIDIDKQRLGRIVIGLYGQVVPKTVENFRALCTGEKGESASGVKLHYKGTPFHRIVSGFVIQGGDIVHHDGKASESIYGGTFPDENFRIKHSHAGVVSMANSGPDSNGSQFFFTTVKASWLDGDHVVFGKVVQGMDTVFAIEGGAGTYSGKPRKKVVIADSGEIPKSRWDEES 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02597 223 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 49 213 IPR002130 GO:0000413|GO:0003755
Tsu02g02597 223 SUPERFAMILY Cyclophilin-like 43 214 IPR029000 -
Tsu02g02597 223 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 66 81 IPR002130 GO:0000413|GO:0003755
Tsu02g02597 223 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 102 114 IPR002130 GO:0000413|GO:0003755
Tsu02g02597 223 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 145 160 IPR002130 GO:0000413|GO:0003755
Tsu02g02597 223 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 160 172 IPR002130 GO:0000413|GO:0003755
Tsu02g02597 223 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 173 188 IPR002130 GO:0000413|GO:0003755
Tsu02g02597 223 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 97 114 IPR020892 GO:0003755|GO:0006457
Tsu02g02597 223 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 52 211 IPR002130 GO:0000413|GO:0003755
Tsu02g02597 223 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 24 223 - -
Tsu02g02597 223 Gene3D - 34 220 IPR029000 -
Tsu02g02597 223 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 24 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02597 Tsu-Chr2 27023204 27027305 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02597 60 211 U-box Gene Family AT5G67530 42.484 4.57e-27 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02597 - - gmx:100800775 379.022