Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02582 ATGGGAAGATCACCTTGTTGTGAAAAAGCTCATACAAACAAAGGAGCATGgacaaaagaagaagatgatagACTCATATCTTATATTAGAGCTCATGGTGAAGGTTGTTGGAGATCTCTTCCTAAAGCTGCTGGCTTACTCCGTTGTGGTAAAAGTTGTCGTCTCCGGTGGATTAATTATCTCCGACCAGACCTTAAACGTGGTAATTTtactgaagaagaagatgaactCATCATCAAACTCCATAGTCTTCTTGGTAACAAATGGTCTTTGATTGCTGGAAGATTACCTGGAAGAACTGATAATGAGATTAAGAATTATTGGAACACTCATATCAGAAGAAAGCTTCTGAACAGAGGAATTGACCCTGCTACTCATAGACCTCTAAATGAACCTCCTCATTCTTCTCATTCTCAATCTCAAAATCATAATCAGAATCATAATCAGAATCAAGAAGCTGTAACTATAGCTGTAGCTGCATCTACAACAACTAGTACTATTCCAGCAGTAACAGTACCAACAACAACTATATCATTTGCTTCATCTGTTAAACAAGAACAATTTCATCATTATAATCATCATCAAGAGATGATTAAAGGGTCAGTGTTAGAAAGATGTCCTGATTTGAATCTTGAGTTAACAATTAGTCCACCAAGACAACAAGAACAAGATGAACAATTCAAAAACAGAAACCTCTGTTTTGTTTGTAGTTTGGGTTTACAGAATAGTAAAGATTGTAGCTGTGATGAAATTGTTGGAAATTCTAGCAGTGGAAATGCTTCTACTGCTCCTGCTTATGATTTCTTAGGTTTGAAAGCTGGTGTTTGGGATTACAAAGGcttagaaatgaaatga 855 0.3415 MGRSPCCEKAHTNKGAWTKEEDDRLISYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPLNEPPHSSHSQSQNHNQNHNQNQEAVTIAVAASTTTSTIPAVTVPTTTISFASSVKQEQFHHYNHHQEMIKGSVLERCPDLNLELTISPPRQQEQDEQFKNRNLCFVCSLGLQNSKDCSCDEIVGNSSSGNASTAPAYDFLGLKAGVWDYKGLEMK 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02582 284 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Tsu02g02582 284 CDD SANT 69 112 IPR001005 -
Tsu02g02582 284 Gene3D - 68 155 - -
Tsu02g02582 284 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 254 - -
Tsu02g02582 284 CDD SANT 16 61 IPR001005 -
Tsu02g02582 284 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Tsu02g02582 284 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Tsu02g02582 284 Gene3D - 14 66 - -
Tsu02g02582 284 SMART sant 66 114 IPR001005 -
Tsu02g02582 284 SMART sant 13 63 IPR001005 -
Tsu02g02582 284 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Tsu02g02582 284 MobiDBLite consensus disorder prediction 131 150 - -
Tsu02g02582 284 MobiDBLite consensus disorder prediction 122 150 - -
Tsu02g02582 284 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Tsu02g02582 284 PANTHER TRANSCRIPTION REPRESSOR MYB4 1 254 - -
Tsu02g02582 284 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Tsu02g02582 284 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02582 Tsu-Chr2 26681816 26683188 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02582 1 284 MYB Transcription Factor Family AT4G38620 58.784 4.22e-112 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu02g02582 Myb_DNA-binding 2.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02582 K09422 - gmx:780553 386.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g02582 02 26681816 26683188 Tsu02g02582 02 26681816 26683188 ECH