LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu02g02574	ATGACAGTTGAAAAGAGATTTGTTCTTGTTGGGATTAGAATAGATAGCCAAAGCAGACAGCTTCTCAATTGGGCTATTGTTAAACTTGCTCAACCTGGTGATTGTGTTATTGCTATACATGTagttaaaactaaaaattcaGGTAATAAATTTCACaacttttatgtatttttaatttttttttcctttaattttgtcatttttagtaGCCAAATAAGTTACTTTCTTAATGCAGATTATGTTTCCAAAAACAAGAGCCTCATTGATAGCTATTTAGAGGTTTATGAAGGCTTGTGTGATATGAAGAAGGTTGGTCTTTCCGGTCAAATCGTAACAGGAAAGTCCATTAAAGATGTTCTTGTTAGAGAAGCAAAAGACCAGGGTGCTTTGGCTCTAGTGGTAGGGGGTAAATCTTCTACAGCTAAATATTGCGCCAAACGGCTTCCACCCACCATCAATGTTCTGGCCATCCAAGATTCAAGGATTGTCTTTGGAAAGTGTAACAATAAACAACCATCAGGTAGTCTTATATTGGATCCGAGACCAAGTTTAACAAGCATAGATAACCTGAGTGACAGAACAAGCCCATCTGAATTTGGTTTCCCCGTGGTGGAGAGTGAGAAATCACCGCGCCAAAATACCAAGGAATCGAAAGAAGAAACACTTGAGGAATCAGAAAAGTACAAGTCACGTTCGATAACCATGTTTGTAGGCGATTCTTCTGAGCAGAAGCTTGGATGGCCTCTACTTCGCATAGCGGATTCAGAAATCTCACAAAGCCGTCATGCAAGGGATATGTCTGTAGTACAATGGGCAATGAGCTTACCAGATCGTTCGTCACATAGTAGTTCTCAATCATCTTCCAGTGACGAAAATCTATTTGACAGGAGCATCAGTGAATTAGAGGATGATTGCTTCAAAAATTATTCACCTTCATCTGTTCTACTACCAAAAGGCCTAGAAGGGATGTTAAATGTAAATTCACTTAATTGCAAGTGGTTCAGTTTTGAGGCTCTCAAATCCTGCACTAGCCAATTCTCTTCAGAAAACTTGATAGGGAAAGGCGGGAGCAACCGTGTGTACAAAGGAGTACTCCCCGATGGAAAACCAATTGCAGTTAAAGTATTGAATTCATCAAAAGAAGCATTGAAAGATTTTGCCTTTGAAGTAGAAATAATATCCTCATTGAAGCACAAAAACATTACTCAGCTGCTTGGAATTTGCATAGAGGACAATACTTTAATATCTGTTTATGATTATTTCCCTAAAGGCAGCTTAGAGGAAAATCTACATGGTAAAAACAAGGATGGATCCCTTTTATCATGGGAAGTGAGATTCAATGTAGCTGTTGGTATCGCCGAGGCGCTTGATTATCTGCACAGAGAAGCTTTGAAGCCTGTTATACACAGAGATATCAAGTCTTCAAATATTCTTCTTTCCAAGGAACTTGAACCACAATTGTCTGATTTTGGACTTGCAATATGGGGACCAACAACTTCATCCTTTTTGACAAAACAAGATGTAGTAGGAACATTTGGTTACCTTGCTCCTGAATATTTCATGTATGGAAAAGTCAGCGATAAGATCGATGTCTACGCCTTCGGTGTTGTACTACTTGAACTCATATCAGGTAGGGAACCAATCAGCTCTGAATCTTGCAAAGGACAGGAGAGCTTGGTAGCTTGGgCAAAACCAATAATAGAAAGTGGAAATATCAAAGGTTTGTTAGACCCAAAATTAGAAGGGAAGATTGATGAAACCCAAATGCAAAGAATGGTTTTAGCAGCATCTTTATGCATCACACGAGCTGCTAGACTTCGTCCTAAATTTAATCAGGTAATAAATAATGAAGAGTTAAATTTTTATACATTGTCGGTGTAA	1881	0.3759	MTVEKRFVLVGIRIDSQSRQLLNWAIVKLAQPGDCVIAIHVVKTKNSGNKFHNFYVFLIFFSFNFVIFSSQISYFLNADYVSKNKSLIDSYLEVYEGLCDMKKVGLSGQIVTGKSIKDVLVREAKDQGALALVVGGKSSTAKYCAKRLPPTINVLAIQDSRIVFGKCNNKQPSGSLILDPRPSLTSIDNLSDRTSPSEFGFPVVESEKSPRQNTKESKEETLEESEKYKSRSITMFVGDSSEQKLGWPLLRIADSEISQSRHARDMSVVQWAMSLPDRSSHSSSQSSSSDENLFDRSISELEDDCFKNYSPSSVLLPKGLEGMLNVNSLNCKWFSFEALKSCTSQFSSENLIGKGGSNRVYKGVLPDGKPIAVKVLNSSKEALKDFAFEVEIISSLKHKNITQLLGICIEDNTLISVYDYFPKGSLEENLHGKNKDGSLLSWEVRFNVAVGIAEALDYLHREALKPVIHRDIKSSNILLSKELEPQLSDFGLAIWGPTTSSFLTKQDVVGTFGYLAPEYFMYGKVSDKIDVYAFGVVLLELISGREPISSESCKGQESLVAWAKPIIESGNIKGLLDPKLEGKIDETQMQRMVLAASLCITRAARLRPKFNQVINNEELNFYTLSV	626

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu02g02574	626	CDD	USP_Like	8	149	-	-
	Tsu02g02574	626	PANTHER	PROTEIN KINASE SUPERFAMILY PROTEIN	75	614	-	-
	Tsu02g02574	626	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	467	479	IPR008271	GO:0004672\|GO:0006468
	Tsu02g02574	626	ProSiteProfiles	Protein kinase domain profile.	346	619	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tsu02g02574	626	PANTHER	OS01G0253100 PROTEIN	75	614	IPR045271	GO:0004714\|GO:0006468
	Tsu02g02574	626	Gene3D	Transferase(Phosphotransferase) domain 1	421	621	-	-
	Tsu02g02574	626	Pfam	Protein kinase domain	347	613	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tsu02g02574	626	MobiDBLite	consensus disorder prediction	187	226	-	-
	Tsu02g02574	626	Coils	Coil	211	231	-	-
	Tsu02g02574	626	PANTHER	PROTEIN KINASE SUPERFAMILY PROTEIN	6	47	-	-
	Tsu02g02574	626	PANTHER	OS01G0253100 PROTEIN	6	47	IPR045271	GO:0004714\|GO:0006468
	Tsu02g02574	626	SMART	serkin_6	346	622	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tsu02g02574	626	MobiDBLite	consensus disorder prediction	209	226	-	-
	Tsu02g02574	626	SUPERFAMILY	Adenine nucleotide alpha hydrolases-like	8	149	-	-
	Tsu02g02574	626	Gene3D	HUPs	6	155	IPR014729	-
	Tsu02g02574	626	Gene3D	Phosphorylase Kinase; domain 1	317	420	-	-
	Tsu02g02574	626	SUPERFAMILY	Protein kinase-like (PK-like)	327	617	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu02g02574	Tsu-Chr2	26536674	26539945	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu02g02574	334	614	Trihelix Transcription Factor Family	AT1G70460	44.406	1.14e-74	251

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VI	Tsu02g02574		Pkinase	1.7e-42	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu02g02574	-		-	gmx:100789189	852.432