Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02569 aTGGAAAATCTCTTAAGAAACCTAGAGGCAGAAAAAAAGGAATTGAAAAGGATAGCTAAGGAAAGGGGAGTGATGGTAATAGCTCTACGTACCAAGTTGGAAGAGGAGAAAAAAAGAGTAAGAATGTTATTAGAAAATGATGCAGAATCATGTTGCGATAAGAATGAAGAAGCAAGAGCTGAAAAACGCGTAAGACGAGAAAACGATATGGTTGTTTGTCCAAAGTGTAACGAAAACGCTCCAAGTGTGTTATTTCTGCCATGTAGGCATATTTGTTCATGCCAACCATGTGAAGCTATACTCCAAGATTGTCCAATATGTGGAATAACAAAGAAAGGTGTCATTGAAATTCagaatttcaattaa 366 0.3579 MENLLRNLEAEKKELKRIAKERGVMVIALRTKLEEEKKRVRMLLENDAESCCDKNEEARAEKRVRRENDMVVCPKCNENAPSVLFLPCRHICSCQPCEAILQDCPICGITKKGVIEIQNFN 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02569 121 ProSiteProfiles Zinc finger RING-type profile. 73 107 IPR001841 -
Tsu02g02569 121 Pfam Zinc finger, C3HC4 type (RING finger) 72 108 - -
Tsu02g02569 121 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 1 118 IPR017066 -
Tsu02g02569 121 Coils Coil 1 21 - -
Tsu02g02569 121 Coils Coil 26 46 - -
Tsu02g02569 121 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 46 118 IPR013083 -
Tsu02g02569 121 PANTHER BOI-RELATED E3 UBIQUITIN-PROTEIN LIGASE 2-RELATED 1 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02569 Tsu-Chr2 26452947 26453312 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02569 30 110 C3H Transcription Factor Family AT1G73950 33.333 1.88e-07 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02569 K19042 - mnt:21391749 104.76