Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tsu02g02556 | ATGTTAGAGAAGTTGATATCAAAGGGAAGaactaagaagaagaatttACACTACATGCTCTCTCCTTTTGCTGCTGATCTTCTTGTTAAAGAATGGCATGCTGTTTCTTCATGGACTTGGGATGCACAGGATGAAACATGCGGGATTTGTAGGATGGCGTTTGATGGATGTTGTCCTGATTGTAAACTTCCTGGGGATGACTGCCCACTCATTTGGGGTGCATGCAATCACGCATTTCATTTGCATTGTATCTTGAAATGGGTGAATTCTCAAACCTCGCAAGCACATTGCCCAATATGCCGTCGGGAATGGCAGTTTAAAGGTTGA | 327 | 0.4159 | MLEKLISKGRTKKKNLHYMLSPFAADLLVKEWHAVSSWTWDAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTSQAHCPICRREWQFKG | 108 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tsu02g02556 | 108 | ProSiteProfiles | Zinc finger RING-type profile. | 58 | 101 | IPR001841 | - | |
Tsu02g02556 | 108 | Pfam | Anaphase-promoting complex subunit 11 RING-H2 finger | 29 | 107 | IPR024991 | GO:0005680|GO:0008270|GO:0031145|GO:0061630|GO:0097602 | |
Tsu02g02556 | 108 | SUPERFAMILY | RING/U-box | 27 | 107 | - | - | |
Tsu02g02556 | 108 | CDD | RING-H2_APC11 | 44 | 106 | IPR024991 | GO:0005680|GO:0008270|GO:0031145|GO:0061630|GO:0097602 | |
Tsu02g02556 | 108 | PANTHER | RING BOX | 29 | 107 | - | - | |
Tsu02g02556 | 108 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 21 | 108 | IPR013083 | - | |
Tsu02g02556 | 108 | PANTHER | ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 | 29 | 107 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Tsu02g02556 | Tsu-Chr2 | 26315645 | 26317994 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Tsu02g02556 | 58 | 101 | C3H Transcription Factor Family | AT1G72220 | 41.304 | 2.12e-06 | 42.7 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tsu02g02556 | K03358 | - | nnu:104607187 | 189.504 |