Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02548 ATGGGATTTCGCTTACCTGGTATTAGAAAGTCATCTTCAAAGGTTGTGGATGAAGTTCCAAAAGGCTATCTCGCAGTCTATGTTGGAGATCAAATGAGACGGTTCGTGATTCCAGTGTCATATTTGAACCAACCTTCATTTCAAGAATTACTGTGTCAAGCAGAAGAAGAATTTGGATACAATCATCCAATGGGTGGTCTAACAATTCCTTGCTGTGAAGATGCTTTCTTAGAACTCACTTCTCGCTTCAATGTTAAATTTCACTAA 267 0.3858 MGFRLPGIRKSSSKVVDEVPKGYLAVYVGDQMRRFVIPVSYLNQPSFQELLCQAEEEFGYNHPMGGLTIPCCEDAFLELTSRFNVKFH 88
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02548 88 Pfam Auxin responsive protein 13 81 IPR003676 GO:0009733
Tsu02g02548 88 PANTHER AUXIN-INDUCED PROTEIN 10A5 12 85 - -
Tsu02g02548 88 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 12 85 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02548 Tsu-Chr2 26232867 26234026 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02548 18 76 Calmodulin-binding Proteins AT3G43120 55.932 5.83e-18 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02548 K14488 - gmx:100806671 139.043