Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02538 ATGGGTTTTCGTTTACCTGGTATTAGAAGGGCAGCATCTTCAAAAGACATGGATGTACCAAAGGGATGCCTTGCAGTGTatgtaggagagaaaatgaagcGGTTTGTGATTCCAATATCATATTTGAAACAAACATCATTCCAAGATCTGCTGAGCCAAGCTGAGGAACAATTTGGATATGACCATCCAATGGGCGGTCTTACTATTCCTTGTGGAGAAGATCTTTTCTTAGATATCACTTCTCGCTTGAATAGGCACTAA 261 0.3755 MGFRLPGIRRAASSKDMDVPKGCLAVYVGEKMKRFVIPISYLKQTSFQDLLSQAEEQFGYDHPMGGLTIPCGEDLFLDITSRLNRH 86
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02538 86 Pfam Auxin responsive protein 13 82 IPR003676 GO:0009733
Tsu02g02538 86 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 8 84 IPR003676 GO:0009733
Tsu02g02538 86 PANTHER SMALL AUXIN-UP RNA-RELATED 8 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02538 Tsu-Chr2 26183405 26183665 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02538 18 76 Calmodulin-binding Proteins AT5G20810 57.627 3.51e-18 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02538 K14488 - gmx:112998524 145.976