Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02490 atggaagttgTTGTAGCAAAAGCGTTGAAACCAAGCTTGAGAACAGAATCTATTTTTCCACAAACAATCTGTGAAGAGATTTTGTGTTTGAACGCTAACAACGTTGTTGTCGGTGAAGATTTTTCCGTTGATGACTTACTTGACTTTTCCAACGGTGATTTTCAACATGGTTCTGTCGGAAAAGAAATTGATGATTacgaggaagaagaagaagaacttgAAAAAAACAGCACCACCTCGGTTTGTTCACAGGACCGAACAGAAGATGACGGTAATTCCAATTCAACAACTTTTTCCGGTGCCGGCGACGGCGAGTCTGACTCCATTTTTGCCGGCGGATTATCAGTTCCgGCTGATGATGTTGCGGATTTGGAATGGGTTTCTCAGTTTGTTGATGATTCTGTGCCGGAACTCTCTCTATTGTATCCGGTTCAGGCCCGGGTTGAACCGGAACCTAGACCGGGCCCAACAAAAGCTGCTTCGCAACTCACTTTAATCCGTAGAAAGCCCAGAACCAACAAGCCTAGAAAGCCCAACCGTAACATGTGGGTCTTCAACCCGGTACTTTCCTCTGCAAAGAAGCAGAGGAAAAAGCTCGAGGCTCAAACGGGTGGATCCCAGTTTCTAAGAAGGTGTAGCCACTGCCAAGTGCAAAAAACGCCACAGTGGAGAACCGGTCCGCTTGGACCGAAAACACTATGTAACGCTTGTGGTGTTCGGTTTAAGTCAGGGCGGCTTTTTCCAGAGTATAGACCGGCTTCAAGCCCGACTTTTTCCGGTGATATTCACTCGAACAGCCACCGTAAGGTTTTGGAGATGAGGCGGAGGAAGGAGACAGATGAACCGGAGACCGGTCTGGACCGGAATCAAATGGTGTCAAGTTGA 885 0.4554 MEVVVAKALKPSLRTESIFPQTICEEILCLNANNVVVGEDFSVDDLLDFSNGDFQHGSVGKEIDDYEEEEEELEKNSTTSVCSQDRTEDDGNSNSTTFSGAGDGESDSIFAGGLSVPADDVADLEWVSQFVDDSVPELSLLYPVQARVEPEPRPGPTKAASQLTLIRRKPRTNKPRKPNRNMWVFNPVLSSAKKQRKKLEAQTGGSQFLRRCSHCQVQKTPQWRTGPLGPKTLCNACGVRFKSGRLFPEYRPASSPTFSGDIHSNSHRKVLEMRRRKETDEPETGLDRNQMVSS 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02490 294 MobiDBLite consensus disorder prediction 148 181 - -
Tsu02g02490 294 ProSiteProfiles GATA-type zinc finger domain profile. 210 242 IPR000679 GO:0006355|GO:0043565
Tsu02g02490 294 PANTHER GATA TRANSCRIPTION FACTOR 1 189 - -
Tsu02g02490 294 PANTHER GATA TRANSCRIPTION FACTOR 190 294 - -
Tsu02g02490 294 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 210 269 - -
Tsu02g02490 294 Coils Coil 56 76 - -
Tsu02g02490 294 MobiDBLite consensus disorder prediction 252 294 - -
Tsu02g02490 294 MobiDBLite consensus disorder prediction 265 285 - -
Tsu02g02490 294 SMART GATA_3 206 256 IPR000679 GO:0006355|GO:0043565
Tsu02g02490 294 Pfam GATA zinc finger 212 245 IPR000679 GO:0006355|GO:0043565
Tsu02g02490 294 MobiDBLite consensus disorder prediction 77 103 - -
Tsu02g02490 294 Gene3D - 207 257 IPR013088 GO:0006355|GO:0008270
Tsu02g02490 294 PIRSF Txn_fac_GATA_plant 24 294 IPR016679 GO:0003677|GO:0005634|GO:0045893
Tsu02g02490 294 PANTHER GATA TRANSCRIPTION FACTOR 190 294 - -
Tsu02g02490 294 PANTHER GATA TRANSCRIPTION FACTOR 1 189 - -
Tsu02g02490 294 MobiDBLite consensus disorder prediction 58 104 - -
Tsu02g02490 294 CDD ZnF_GATA 211 268 IPR000679 GO:0006355|GO:0043565
Tsu02g02490 294 ProSitePatterns GATA-type zinc finger domain. 212 237 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02490 Tsu-Chr2 25555512 25557481 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02490 40 280 C2C2-Gata Transcription Factor Family AT4G36240 46.667 6.44e-54 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Tsu02g02490 GATA 3.2e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02490 - - gmx:100776188 369.777
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g02490 02 25555512 25557481 Tsu02g02490 02 25555512 25557481 ECH