Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02487 ATGGCTCTTTCCATTGAGATTGATGACTTTCCCTACCAATTCCCAGAGGGTTTAAGAGTCTTTGTCATTGATCATGACACCACTCAACTTAATGCCATTGCGGATATGTGTTTTCAATGTAACTATGAAGTTACCACATGCCCTTTTGCTTCTTTTGCCCTACATCTTCTGAGAGAAACAAAGGGTCTTTGTTTTGATGTCATACTAATTGAAGCTCAAATGCCGGATATGGATTCCTACGATTTTTTGCAACGTGTTACACAGGAAATCAAAATTCCAGTCATTATGATGTCATGTGTTGATGATGACACAACAAGTGCAAGGATGAAGGCTATTGAAAAAGGGGCTTCTGATTATTGGCTAAAGCCTTTGAATGTGAATCATATCAACAACATGTGGCAACATGTTGCAACAATTCAACAACATGATCAAATTCAAAGAATCTTGGAGGTCAAAACAGGACAAAAACTAATGAAGAGAGATGAACAAAGtgcaagaaaagaaacaaatgcTTGTGTTCTTGAAACAAAGAATAATCGGGTATCATGGCAGTCACCAGAACttcaacaacaatttttaatagCTGTGAATCAACTTGGCATTGATAAGGcaacaccaaaaaaaattgctaaATTGATGGATGTTCCGGGTTTGACAACATCGCACGTTGCTAGCCATTTGCAGAAATTCAGACTTCGTTATTACTAA 708 0.3489 MALSIEIDDFPYQFPEGLRVFVIDHDTTQLNAIADMCFQCNYEVTTCPFASFALHLLRETKGLCFDVILIEAQMPDMDSYDFLQRVTQEIKIPVIMMSCVDDDTTSARMKAIEKGASDYWLKPLNVNHINNMWQHVATIQQHDQIQRILEVKTGQKLMKRDEQSARKETNACVLETKNNRVSWQSPELQQQFLIAVNQLGIDKATPKKIAKLMDVPGLTTSHVASHLQKFRLRYY 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02487 235 CDD REC_typeB_ARR-like 20 137 - -
Tsu02g02487 235 Gene3D - 13 144 - -
Tsu02g02487 235 Pfam Response regulator receiver domain 20 131 IPR001789 GO:0000160
Tsu02g02487 235 PANTHER TWO-COMPONENT RESPONSE REGULATOR 14 232 IPR045279 GO:0009736
Tsu02g02487 235 SUPERFAMILY Homeodomain-like 177 233 IPR009057 -
Tsu02g02487 235 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 178 233 IPR006447 GO:0003677
Tsu02g02487 235 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 185 235 IPR017930 -
Tsu02g02487 235 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR14 14 232 - -
Tsu02g02487 235 SUPERFAMILY CheY-like 16 142 IPR011006 -
Tsu02g02487 235 SMART REC_2 18 133 IPR001789 GO:0000160
Tsu02g02487 235 ProSiteProfiles Response regulatory domain profile. 19 137 IPR001789 GO:0000160
Tsu02g02487 235 Gene3D - 175 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02487 Tsu-Chr2 25495254 25495961 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02487 1 232 Response Regulator Gene Family AT4G31920 39.419 1.48e-42 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Tsu02g02487 Response_reg 3.1e-14 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02487 - K14491 mtr:MTR_6g045327 205.682