Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02478 ATGGCAGGAACAAGTCAGAAATTTGCAATAGGAATCGACTTAGGAACAACATATTCTTGTGTTGCTGTGTGGAGGAATGATCAGTTAGAGATCATAGTGAATGACCAAGGGAACAGAACAACACCTTCTTATGTTGCCTTCACTGGCTCTCAAAGGATGATTGGTGATTCTGCTTTCAATATGGCTGCTTGTAACCCAACCAACACAATCTACGATGCGAAGAGGCTCATTGGTAGGAAATATTCTCATGCCATAGTAAAAAGCGATATGAAATTATGGCCATTTAAAGTAATTAGCGGCCTCGATGACAAACCCATGATTGTTGTCAATTACAACaatgaagaaaaacaatttgcTGCAGAGGAAATATCAGCCATGATATTGGCAAAAATGCGTGAGATTGCAGAAGCTTACCTTGGATCAACTGTTAAAGATGCTGTTATAACCGTTCCTGCTTATTTCAATAACTCACAACGTGAAGCTACTAAAGATGCTGGTACTATTGCAGGCCTCAACGTTATGCAAATAATCAACGAACCTACTGCAGCAGCAATTGCATATGGCCTTAACATGAAACCATTTAATCAAGGACGAAGACATGTTTTCATTTTTGATTTAGGTGGTGGAACTTTGGATGTGTCTATTCTCACATTTGAGAAAGACGCTATTAAAGTTAAGGCCATTGCCGGAGACACCCACCTTGGGGGGGAAGACTTTGATAATTCAATGGTGAACTATTTTGTGAAGGAGTTCATGAGGAAGTACAAAATTGACATTAGTGAAGACCCAAAAGCTCTTAGGAGGTTGAAGTCTGCTTGCGAGAAAGCAAAGAGGACACTTTCTTCCAATATTCAGGCCAACATTGAGTtagaaaatttaaatcaaaatatagatTTCTACTCATCAATTAGTCGCGCAAGATTTGAGGAGCTCAACAAAAACTATTTCAACAAGTGCATGGAGAATGTAGAAAAATGTTTAACGGATAGTGGAATGGACAAGAGTAGCATTCAAGATGTTGTTCTTGTCGGGGGCTCTTCCAGGATTGTAAAAGTGCAACAATTATTGAGTGACTTCTTTGAAGGGAAGGTTTTATGCAAAAGCATCAATGCCGATGAGGCGGTTGCACATGGTGCTGCAGTCCATGCTTCTATATTGAGTGGTGAGTTTAGTGAAAAGGTTCAAGATTTGCTATTGAGGGAGGTCATTCCTTTGTCTCTTGGATTGGAAACTCGTGGGGGAatcatgaaaataataattcctAGGAACACCATAATTCCTACAAGCATGGAACACATATTCACCACATATTTGAAAGATCAagcaaatattttaattgatgtttATGAGGGTGAGATGCCAAAAACTAAGGACAACAACTTACTAGGAAGGTTTGTGTTGGAAATTCCTCCAGCTCCGGCAGGTATTCCTCACATCAAGATCAACTTCAAAATCGATGATGATGGCATCTTACATGTCACTGGCTCGGAAAGATATCTCGGAGTTAACAAGacagttaaaataataagtgaCAAGGGAAGACTGTCAAGGAAGGACATTGAAAGGATGATCAAAGAAGCCGAGGAGTACAAGGATAAAGAAAAGAGGTATAGGAAGAATGTTAAAGCAAAAAATGCAGTGGAGCAGTATGCGTACAACATGAGGAATGCCATAAATGATAAGGAGATTAGATCGAAGCTTTCCAATGAAGATAAGAAAAAGATCAATGATGCAATTAATTTAGTCTTAATGTGGATTGATATCAATATTGTTGCAGAACAATATGATTATGAGTGTTATGCAAGAATTCTTTCAAATGAGTTTGATCCAATCATGGTGAAGATGATAAAACACGAGGTTATTGATGTGCAGCAAGGTACTTATGATgctaataataaaaagatacgACATTGGTTATCATTATTTGCAAAGTATGCTTTTCAGATAGTGACTTCAGCTGCAACTGGTAACATTATCGGACTAACTTCTACTATAATTAGTGTGTGTTTTTCAAATAGTTAA 2022 0.3655 MAGTSQKFAIGIDLGTTYSCVAVWRNDQLEIIVNDQGNRTTPSYVAFTGSQRMIGDSAFNMAACNPTNTIYDAKRLIGRKYSHAIVKSDMKLWPFKVISGLDDKPMIVVNYNNEEKQFAAEEISAMILAKMREIAEAYLGSTVKDAVITVPAYFNNSQREATKDAGTIAGLNVMQIINEPTAAAIAYGLNMKPFNQGRRHVFIFDLGGGTLDVSILTFEKDAIKVKAIAGDTHLGGEDFDNSMVNYFVKEFMRKYKIDISEDPKALRRLKSACEKAKRTLSSNIQANIELENLNQNIDFYSSISRARFEELNKNYFNKCMENVEKCLTDSGMDKSSIQDVVLVGGSSRIVKVQQLLSDFFEGKVLCKSINADEAVAHGAAVHASILSGEFSEKVQDLLLREVIPLSLGLETRGGIMKIIIPRNTIIPTSMEHIFTTYLKDQANILIDVYEGEMPKTKDNNLLGRFVLEIPPAPAGIPHIKINFKIDDDGILHVTGSERYLGVNKTVKIISDKGRLSRKDIERMIKEAEEYKDKEKRYRKNVKAKNAVEQYAYNMRNAINDKEIRSKLSNEDKKKINDAINLVLMWIDINIVAEQYDYECYARILSNEFDPIMVKMIKHEVIDVQQGTYDANNKKIRHWLSLFAKYAFQIVTSAATGNIIGLTSTIISVCFSNS 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02478 673 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 391 543 IPR029047 -
Tsu02g02478 673 Gene3D - 71 126 - -
Tsu02g02478 673 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 37C-RELATED 3 623 - -
Tsu02g02478 673 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 543 618 IPR029048 -
Tsu02g02478 673 Coils Coil 520 540 - -
Tsu02g02478 673 PRINTS 70kDa heat shock protein signature 8 21 - -
Tsu02g02478 673 PRINTS 70kDa heat shock protein signature 476 492 - -
Tsu02g02478 673 PRINTS 70kDa heat shock protein signature 36 48 - -
Tsu02g02478 673 PRINTS 70kDa heat shock protein signature 337 353 - -
Tsu02g02478 673 PRINTS 70kDa heat shock protein signature 369 389 - -
Tsu02g02478 673 PRINTS 70kDa heat shock protein signature 146 166 - -
Tsu02g02478 673 PRINTS 70kDa heat shock protein signature 209 219 - -
Tsu02g02478 673 PRINTS 70kDa heat shock protein signature 396 415 - -
Tsu02g02478 673 PRINTS 70kDa heat shock protein signature 58 66 - -
Tsu02g02478 673 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Tsu02g02478 673 ProSitePatterns Heat shock hsp70 proteins family signature 2. 203 216 IPR018181 -
Tsu02g02478 673 PANTHER HEAT SHOCK PROTEIN 70KDA 3 623 IPR013126 GO:0005524|GO:0140662
Tsu02g02478 673 Gene3D - 10 383 - -
Tsu02g02478 673 SUPERFAMILY Actin-like ATPase domain 8 191 IPR043129 -
Tsu02g02478 673 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 392 548 IPR029047 -
Tsu02g02478 673 SUPERFAMILY Actin-like ATPase domain 197 388 IPR043129 -
Tsu02g02478 673 Pfam Hsp70 protein 9 581 IPR013126 GO:0005524|GO:0140662
Tsu02g02478 673 Gene3D - 192 366 - -
Tsu02g02478 673 Gene3D - 544 617 IPR029048 -
Tsu02g02478 673 Gene3D Actin; Chain A, domain 4 235 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02478 Tsu-Chr2 25381938 25388512 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02478 1 615 Calmodulin-binding Proteins AT3G12580 64.123 0.0 823
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02478 K03283 - gmx:100798636 846.654