Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02466 ATGAAGATCCAGTGTGATGCATGTCAGAAACAAGAGGCCTCATTGCTCTGCCCTGCAGATGAAGCAGCTCTCTGCAATCACTGTGATCATACAATCCATCAGGCCAACAAGCTCTCTGCCAAACACAAACGTTTCTCTCTTCACCACCCCACTTCCAAAGACATCCCTCTCTGTGATATCTGCAAGGAGAGACGTGCATATCTATTTTGCAAAGAAGACAGAGCAATACTTTGCAGAGAATGTGACATTCCTATCCATAGAGACACTGAACTTACCAAGAAACATAACAGATTTCTTCTCACAGGCGTGAAGATCGGTGCTGCTGCTTCTCCTTCAGACCCAACAACTTCAAATGGCTCAGAAGTAAGAACCTTGCTTTCAAGAGAATCACGACCAAGTTCATTTTCAAGTGAAAATAACCGTTGTTCTCGCACTTTCAAAGACAACATGACTTGTGATACAATTTCAACAAGTAGCATTTCTGAATACTTGATTGAATCAATTCCTGGTTATTGCATGGAAGACCTTTTTGATGCTTCTTTTGCACCTAGTGTTTTCTGTAAGGATTATCAACAGAACCAAGATCATCAAGTTATAAGCATGTGTGCCTCGGTACCACAATATGAAGTTAGATACCCTCAGCTTTATTCGAACGTTCCACAGATTGATTCTTTAGATGTTATGGAAATGCCAGTAACGAAAGCTGTCGAGGGATATTCGAGTTGCAGATACAATGTATTTTTGGATCGGtag 753 0.4104 MKIQCDACQKQEASLLCPADEAALCNHCDHTIHQANKLSAKHKRFSLHHPTSKDIPLCDICKERRAYLFCKEDRAILCRECDIPIHRDTELTKKHNRFLLTGVKIGAAASPSDPTTSNGSEVRTLLSRESRPSSFSSENNRCSRTFKDNMTCDTISTSSISEYLIESIPGYCMEDLFDASFAPSVFCKDYQQNQDHQVISMCASVPQYEVRYPQLYSNVPQIDSLDVMEMPVTKAVEGYSSCRYNVFLDR 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02466 250 MobiDBLite consensus disorder prediction 109 139 - -
Tsu02g02466 250 PANTHER B-BOX ZINC FINGER PROTEIN 20 1 198 - -
Tsu02g02466 250 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 198 - -
Tsu02g02466 250 Pfam B-box zinc finger 56 96 IPR000315 GO:0008270
Tsu02g02466 250 CDD Bbox1_BBX-like 57 100 - -
Tsu02g02466 250 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Tsu02g02466 250 CDD Bbox1_BBX-like 5 47 - -
Tsu02g02466 250 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Tsu02g02466 250 SMART bboxneu5 53 100 IPR000315 GO:0008270
Tsu02g02466 250 SMART bboxneu5 4 47 IPR000315 GO:0008270
Tsu02g02466 250 MobiDBLite consensus disorder prediction 110 139 - -
Tsu02g02466 250 Gene3D Classic Zinc Finger 1 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02466 Tsu-Chr2 25164827 25165938 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02466 1 193 C2C2-CO-like Transcription Factor Family AT4G39070 50.463 2.10e-57 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Tsu02g02466 zf-B_box 6.6e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02466 - - gmx:100790232 297.745
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g02466 02 25164827 25165938 Tsu02g02466 02 25164827 25165938 ECH
Tsu02g02466 02 25164827 25165938 Tsu05g00810 05 6903092 6906224 ECH