Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02457 ATGTCTGCAACACAATTAAGAGAAGAAGTATTAAAGGGTTCAAAGTGTGAAGAGTGTGGGAACCAAGCAAAGAAGGATTGTGCATACTCAAGATGCAGAAATTGTTGCAAGAACAAAGGCTTTAACTGCCAAACACATATCAGAAGCACTTGGATTCCTGCTGATAGAAGAAGGCGCCACAGAATGGAGTACCAACCTCCAAACCTTGATGAACATAAAAGGAACAAGCAGATCAACCCCTTTTCAAGTTTTGAGGAGTTTAAATTTCCAGCTGTTGTGAGTTCCATGGCGACATTGACCTGTGTTCAGATGCGATCTATGGATGACAAGGTTAATGAAATGGCCTATCAAACAAGTATAGAAATTGGAGGACATTTATTTAATGGTATTCTTTATGATCAAGGCCTTGATCAAAGCTTCAATAATAATACTAGGGGTGATTACTATATTGATCATCTTGATCAGCAACAAAATCGCAATCTTTTTTATGATGGTGCAACTGCAAATATGGCTGCCGCTGCTTCAAATCATCACCTTTTATTACCTCCGCCGCATCCATTACCTTCCTTCGGGCCTAGTATGCCATATTAG 591 0.3959 MSATQLREEVLKGSKCEECGNQAKKDCAYSRCRNCCKNKGFNCQTHIRSTWIPADRRRRHRMEYQPPNLDEHKRNKQINPFSSFEEFKFPAVVSSMATLTCVQMRSMDDKVNEMAYQTSIEIGGHLFNGILYDQGLDQSFNNNTRGDYYIDHLDQQQNRNLFYDGATANMAAAASNHHLLLPPPHPLPSFGPSMPY 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02457 196 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 88 136 IPR006511 -
Tsu02g02457 196 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 15 57 IPR006510 -
Tsu02g02457 196 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 6 190 IPR007818 GO:0003700|GO:0006355
Tsu02g02457 196 Pfam Domain of unknown function (DUF702) 13 137 - -
Tsu02g02457 196 PANTHER BNAC01G23660D PROTEIN 6 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02457 Tsu-Chr2 25066127 25067024 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02457 10 144 C2H2 Transcription Factor Family AT2G21400 46.667 1.71e-43 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Tsu02g02457 DUF702 9.6e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02457 - - mtr:MTR_4g071110 241.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g02457 02 25066127 25067024 Tsu02g02457 02 25066127 25067024 ECH
Tsu01g00255 01 2091164 2092648 Tsu02g02457 02 25066127 25067024 ECH
Tsu07g00295 07 2265278 2266513 Tsu02g02457 02 25066127 25067024 ECH