Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02456 ATGGCTTCCGATTCTACTCCCATGGATACCAACAACGgtCCTTCATCACCAGACAATTCCCTTTCAAGTCCGATTCCCAACACTTACTCTTCTCCCGGCCGGAGACGCCGCCGTCAATCTACTACTCCTTCAGGAACTCCACAGCCGAACAGATCTCGATTTGCTGCATCCGATGCTACACCTACACCGTCACGCCACCGTGCTAGAGGCGGCGGTATCCCCTCCGGTCGTCGTGTTCCCGCTACTCCGACTTCTACTTCGGAGGATATACCGATGTCGTCGGAAGGCGGTGACGGTTACGACATGGATGATGCTGGTCCTACTTATGTGTGGGGGACTAATATAAGTGTGGAAGATGTAAACGATGCGATTCAGAGGTTTTTGAAGCATTTTAGAGAAAGGACTAGTTCGCAGGGTGATACTgatgatttggatttggatgttGATGGGAAGTATGAGAAATTGATTAAACAGGTTATTGAATTAGAAGGTGAATCTATTGATGTTGATGCTCGTGATGTGTTTGATCATGATCCTGATTTGTATAATAAGATGGTGAGGTATCCTCTTGAGGTGCTTGCAATTTTTGATATGGTTTTGATGAATATGGTTACTAGAATGAAACCAATGTTTGAAAAGCATGTTCAAACGAGGATTTTTAATCTTAAATCCTCAACTTCTATGAGAAATTTGAACCCTTCTGaTATTGAGAGAATGGTATCAATGAAGGGTATGATTATTCGAAGTAGTTCAATTATACCAGAAATTAGGGAAGCTATATTTAGGTGTCTTGTGTGTGGATTCTGCTCTGATCCAGTTCCTGTGGAGAGAGgaCGAATTGCTGAACCTACTGTATGCTTGAGGGAAGAGTGTCAGTCCAGGAATTCGATGACACTTGTTCACAACCGATGCAAGTTTACTGATAAACAAATTGTGAGGCTCCAGGAGACACCTGATGAGATACCCGAAGGAGGAACACCTCATACTGTTAGCTTGCTGTTGCATGACAAACTGGTGGATACTGGAAAGCCAGGTGACAGAGTTGAGGTGACTGGTATATACAGGGCCATGAGTGTCAGGGTGGGACCAACTCAGAGAACTGTTAAGTCATTGTTCAAAACGTATATTGATTGTCTTCACATAAAAAAGACATCAAAGTCCCGGATGCTAGTTGAGGATGATATGGAGGTTGACAATGGCCAGGGAAGAAATGCCGAAGAAGTTATATTTGATGAAGAAAAGGTGGCTCAACTGAAGGAGCTCTCCAAACAACCAGATATATATGAAAGACTGACAAAGTCATTGGCGCCAAACATCTGGGAGCTAGATGATGTAAAAAAAGGTCTTCTTTGCCAGcTTTTTGGTGGCAATGCTTTGAAGTTGGCATCTGGTGCTAGCTTTCGTGGTGATATAAATATTCTCCTTGTTGGTGATCCTGGTACAAGTAAGTCGCAGCTACTTCAGTACATACACAAACTATCTCCACGTGGCATTTACACCAGTGGAAGGGGGAGCTCAGCTGTTGGATTGACTGCTTATGTGGCCAAAGATCCTGAAACAGGCGAAACTGTTCTTGAGAGTGGTGCCCTTGTTTTGAGTGACCGAGGTATTTGCTGCATAGATGAATTTGACAAGATGTCTGACAATGCAAGGAGCATGTTACATGAGGTGATGGAACAACAAACCGTTTCAATAGCAAAGGCAGGCATTATTGCTTCCCTCAATGCTAGGACTTCAGTTTTGGCTTGTGCAAACCCTAGTGGGTCACGATATAATCCCCGCTTGTCTGTCATTGACAACATTCACCTTCCTCCCACTCTTTTATCCAGgtttgatttgatttactTAATGCTTGACAAGGCTGATGAACAGACTGACAGACGACTTGCCAAACATATTGTTTCCCTACACTTTAAGGATTATGAGAACATGGAGCACGATGTGTTGGACCTTTCTACACTAACTGATTATGTTAGCTATGCCCGAAAGCACATACACCCACAGCTATCAGATGAAGCTGCTGATGAATTGATTACAGGCTATGTAAAAATAAGGGGTAGGGGGAAATTTACCGGAAGTAGCAAAAAGGTAATAACAGCAACTCCGAGGCAGATTGAGAGTCTATTGCGCCTTAGTGAAGCATTGGCTCGGATTCGCTTCTCAGAATGGGTTGAAAAGCATGATGTTGTGGAGGCATTTCGGCTTCTGGAAGTTGCGATGCAGCAGTCTGCAATGGATATCAGAACTGGAACTATTGACATGGATCTTATTACTACTGGAGTTTCGTCAAGCGAAAGGATGAGACGAGAAAGTTTGATTCAAGATACTCGCAATTTAATCATGGAGAAGATGCAAATTGGGGGACGTTCCATGCGGTTGTTGGAGATATTGGAAGAATTAAAGAATCAGAGCCCTGGCAGCGAAATTCATCTTAACGATCTAAGAAGTGCAGTTGCTACTCTCGCCAGCGAAGGATTTCTTTCCATGCAGGGTGACAGTGTAAAAAGAACATGA 2514 0.4296 MASDSTPMDTNNGPSSPDNSLSSPIPNTYSSPGRRRRRQSTTPSGTPQPNRSRFAASDATPTPSRHRARGGGIPSGRRVPATPTSTSEDIPMSSEGGDGYDMDDAGPTYVWGTNISVEDVNDAIQRFLKHFRERTSSQGDTDDLDLDVDGKYEKLIKQVIELEGESIDVDARDVFDHDPDLYNKMVRYPLEVLAIFDMVLMNMVTRMKPMFEKHVQTRIFNLKSSTSMRNLNPSDIERMVSMKGMIIRSSSIIPEIREAIFRCLVCGFCSDPVPVERGRIAEPTVCLREECQSRNSMTLVHNRCKFTDKQIVRLQETPDEIPEGGTPHTVSLLLHDKLVDTGKPGDRVEVTGIYRAMSVRVGPTQRTVKSLFKTYIDCLHIKKTSKSRMLVEDDMEVDNGQGRNAEEVIFDEEKVAQLKELSKQPDIYERLTKSLAPNIWELDDVKKGLLCQLFGGNALKLASGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGRGSSAVGLTAYVAKDPETGETVLESGALVLSDRGICCIDEFDKMSDNARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIDNIHLPPTLLSRFDLIYLMLDKADEQTDRRLAKHIVSLHFKDYENMEHDVLDLSTLTDYVSYARKHIHPQLSDEAADELITGYVKIRGRGKFTGSSKKVITATPRQIESLLRLSEALARIRFSEWVEKHDVVEAFRLLEVAMQQSAMDIRTGTIDMDLITTGVSSSERMRRESLIQDTRNLIMEKMQIGGRSMRLLEILEELKNQSPGSEIHLNDLRSAVATLASEGFLSMQGDSVKRT 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02456 837 ProSiteProfiles MCM family domain profile. 427 633 IPR001208 GO:0003677|GO:0005524|GO:0032508
Tsu02g02456 837 Pfam MCM OB domain 228 357 IPR033762 -
Tsu02g02456 837 SUPERFAMILY Nucleic acid-binding proteins 149 378 IPR012340 -
Tsu02g02456 837 ProSitePatterns MCM family signature. 536 544 IPR018525 GO:0003677|GO:0005524|GO:0006260
Tsu02g02456 837 Gene3D - 228 367 IPR012340 -
Tsu02g02456 837 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 438 740 IPR027417 -
Tsu02g02456 837 Gene3D - 750 833 IPR036388 -
Tsu02g02456 837 PANTHER DNA REPLICATION LICENSING FACTOR MCM4 77 836 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Tsu02g02456 837 PRINTS Mini-chromosome maintenance (MCM) protein family signature 468 483 IPR001208 GO:0003677|GO:0005524|GO:0032508
Tsu02g02456 837 PRINTS Mini-chromosome maintenance (MCM) protein family signature 528 542 IPR001208 GO:0003677|GO:0005524|GO:0032508
Tsu02g02456 837 PRINTS Mini-chromosome maintenance (MCM) protein family signature 556 569 IPR001208 GO:0003677|GO:0005524|GO:0032508
Tsu02g02456 837 PRINTS Mini-chromosome maintenance (MCM) protein family signature 580 592 IPR001208 GO:0003677|GO:0005524|GO:0032508
Tsu02g02456 837 PRINTS Mini-chromosome maintenance (MCM) protein family signature 607 615 IPR001208 GO:0003677|GO:0005524|GO:0032508
Tsu02g02456 837 Pfam MCM AAA-lid domain 653 739 IPR041562 -
Tsu02g02456 837 Gene3D - 408 749 IPR027417 -
Tsu02g02456 837 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 250 263 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Tsu02g02456 837 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 301 313 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Tsu02g02456 837 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 443 454 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Tsu02g02456 837 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 589 606 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Tsu02g02456 837 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 741 750 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Tsu02g02456 837 MobiDBLite consensus disorder prediction 1 105 - -
Tsu02g02456 837 Gene3D - 255 307 - -
Tsu02g02456 837 Gene3D - 114 222 - -
Tsu02g02456 837 Pfam MCM P-loop domain 415 637 IPR001208 GO:0003677|GO:0005524|GO:0032508
Tsu02g02456 837 MobiDBLite consensus disorder prediction 1 59 - -
Tsu02g02456 837 Pfam MCM N-terminal domain 123 221 IPR027925 -
Tsu02g02456 837 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 77 836 IPR031327 GO:0003677|GO:0005524|GO:0032508
Tsu02g02456 837 SMART mcm 224 741 IPR031327 GO:0003677|GO:0005524|GO:0032508
Tsu02g02456 837 CDD MCM4 430 739 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02456 Tsu-Chr2 25057139 25062279 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02456 1 836 Core DNA Replication Machinery Family AT2G16440 73.140 0.0 1249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02456 K02212 - gmx:100805788 1399.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g02456 02 25057139 25062279 Tsu02g02456 02 25057139 25062279 ECH