Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02414 ATGTTACACTGTCTGAACACTTCGGGTAATCTAGTCGGAGGAGGAACCATTACCGACATGACAGTGTTAGAAAGACAAAGAGCAAGAATCAAGTTTCAACATGAACACGAACAACAACAATTCTCTTCTTCATACCAACAACAATTTATGATGCTTAGCTGTGATTCCGCTCTCGGCGAAATCGTAGCTAATTCAATGAAACCTGACCCGGATTATGAAGAAGAAACCgttaagaaaaggaaaaatgataATAAAGTTGATTTGAATTCTAAAGACAAGAGGATCAAAGTTTGTGTAGAAGAAGGTGAATCCAAAATCATAGAGCTAAGAAAGGGACAGAAGAATACAAAGTTCAACAATGGAAacaaaaataagagagaaaattGTGAAGATAATAATTCGAAGGAAAATTCGAAAGGATCTGAGGTTCAAAATCAGAAGCCTGATTACATTCATGTTCGTGCACGTCGTGGTCAAGCCACTGATAGTCATAGCTTAGCTGAAAGAGTTAGAAGGGAAAAGATAAGTGAGAGGATGAAATATTTGCAGGATTTAGTGCCAGGATGCAACAAAATTGCAGGCAAAGCTGGAATGCTTGATGAAATCATTAACTATGTTCAGTCTCTTCAAAGACAAGTTGAGTTCTTGTCGATGAAATTAGCGGCCGTAAACCCAAGACTTGACTTCAACATTGATGAATTGTTTACCAAAGAGGTGTTTACTCAAAATTTTCCAACTATAGGGATGCCATCAGAAATGACTAACCCTGCATATCTTCAATTCAATTCAGCACAACAACTGGTTTCATGTTGTGGCGGATTAATAAACAATATGGGAATAATCCCTCCGGAAATCGGCCTTCGTAGGAACATTAATGCACCAACATCTGCATCTTTACCCGAAATCTTTCTTGACTCATCAGTTTTCACTCATATGCTACCCACCACAACTTGGGAAGGTGattttcaaaatcttcaaaatGTAGATTTTGATCAAGGACGATCAATATCCTTTCCTTCTCAACCATTCACAGGTATGGTTGAAGCTAGCAATATGAAGATGGAGATGTAA 1071 0.366 MLHCLNTSGNLVGGGTITDMTVLERQRARIKFQHEHEQQQFSSSYQQQFMMLSCDSALGEIVANSMKPDPDYEEETVKKRKNDNKVDLNSKDKRIKVCVEEGESKIIELRKGQKNTKFNNGNKNKRENCEDNNSKENSKGSEVQNQKPDYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKIAGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLDFNIDELFTKEVFTQNFPTIGMPSEMTNPAYLQFNSAQQLVSCCGGLINNMGIIPPEIGLRRNINAPTSASLPEIFLDSSVFTHMLPTTTWEGDFQNLQNVDFDQGRSISFPSQPFTGMVEASNMKMEM 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02414 356 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 75 335 IPR024097 GO:0006355
Tsu02g02414 356 MobiDBLite consensus disorder prediction 120 137 - -
Tsu02g02414 356 Gene3D - 156 230 IPR036638 GO:0046983
Tsu02g02414 356 Pfam Helix-loop-helix DNA-binding domain 163 210 IPR011598 GO:0046983
Tsu02g02414 356 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 159 209 IPR011598 GO:0046983
Tsu02g02414 356 MobiDBLite consensus disorder prediction 114 148 - -
Tsu02g02414 356 PANTHER TRANSCRIPTION FACTOR BHLH63-LIKE 75 335 - -
Tsu02g02414 356 CDD bHLH_AtBPE_like 149 234 - -
Tsu02g02414 356 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 157 228 IPR036638 GO:0046983
Tsu02g02414 356 SMART finulus 165 215 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02414 Tsu-Chr2 24630409 24633823 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02414 19 267 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G34530 46.233 7.66e-64 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu02g02414 HLH 3.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02414 - - gsj:114373950 435.261
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g02414 02 24630409 24633823 Tsu02g02414 02 24630409 24633823 ECH
Tsu02g02414 02 24630409 24633823 Tsu05g00725 05 6127514 6129764 ECH