Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02406 ATGGCAGATGTTGAGTACCGTTGCTTCGTCGGAGGTCTTGCATGGGCTACAGACAGTGACGCTCTCGAGAAAGCCTTCTCTTCCTACGGCGAGATCGTTGACTCGAAGatCATTAACGATCGTGAGACTGGAAGATCAAGAGGATTTGGATTTGTGACATTTGCTAATGAGAAATCAATGAGAGATGCTATTGAAGGAATGAACGGTCAGAATATGGATGGACGTAACATTACTGTTAACGAGGCACAAAACAGATCCAGTGGCggaggaggtggtggtggttatggtggtggtggtggtcgTCGTGAAGGTGGATACAATAGAAGCAGTGGTGGAGGTTAtggtggaggtggtggtggtggttatGGTGGTGGTAGGGACCGTGGTTATGGTGATGACGGTGGTTCCCGTTATTCTTCTCGTGGCGGAGGTGGTGGTGGAAACTGGAGGGAGTAG 456 0.4167 MADVEYRCFVGGLAWATDSDALEKAFSSYGEIVDSKIINDRETGRSRGFGFVTFANEKSMRDAIEGMNGQNMDGRNITVNEAQNRSSGGGGGGGYGGGGGRREGGYNRSSGGGYGGGGGGGYGGGRDRGYGDDGGSRYSSRGGGGGGNWRE 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02406 151 MobiDBLite consensus disorder prediction 66 151 - -
Tsu02g02406 151 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 77 IPR000504 GO:0003723
Tsu02g02406 151 PANTHER GEO13361P1-RELATED 2 150 - -
Tsu02g02406 151 SUPERFAMILY RNA-binding domain, RBD 6 132 IPR035979 GO:0003676
Tsu02g02406 151 MobiDBLite consensus disorder prediction 71 87 - -
Tsu02g02406 151 SMART rrm1_1 7 80 IPR000504 GO:0003723
Tsu02g02406 151 Gene3D - 2 102 IPR012677 -
Tsu02g02406 151 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 84 IPR000504 GO:0003723
Tsu02g02406 151 PANTHER RNA-BINDING PROTEIN GRP1A, PUTATIVE, EXPRESSED-RELATED 2 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02406 Tsu-Chr2 24535625 24536315 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02406 8 86 Eukaryotic Initiation Factors Gene Family AT4G34110 39.241 1.25e-09 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02406 - K13195 ccaj:109800369 157.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g02406 02 24535625 24536315 Tsu02g02406 02 24535625 24536315 ECH