Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02404 ATGGCTTCCGCAGATGTTGAGTACCGTTGCTTCGTTGGTGGTCTTGCATGGGCCACTGACAGTGATGCTCTCGAGAAAGCTTTCTCTCAGTACGGCGAGGTCATCGATTCGAAGATTATTAACGATCGTGAGACTGGAAGATCAAGAGGTTTCGGATTTGTGACTTTTGCTACTGAGCAATCCATGAGAGATGCGATCGAGGGAATGAACGGTCAGGATATGAACGGACGTAACATCACTGTGAATGAAGCTCAGAGCCGTGGaagtggaggaggaggaggcCGTGGTGGAGGTGGATATAGTGGAGGAGGAGGTGGTGGCGGTTATGGTGGTCGCCGTGAAGGTGGTGGTGGATACAGCAGaggaggtggtggtggaggaTATGGTGGAGGTGGTTATGGTGGTGGAAGGGATCGTTCATATGGTGGAAATGATGGTGGTTACTCACGTGGaggcggtggtggtggtggacaGTGGTAG 480 0.4479 MASADVEYRCFVGGLAWATDSDALEKAFSQYGEVIDSKIINDRETGRSRGFGFVTFATEQSMRDAIEGMNGQDMNGRNITVNEAQSRGSGGGGGRGGGGYSGGGGGGGYGGRREGGGGYSRGGGGGGYGGGGYGGGRDRSYGGNDGGYSRGGGGGGGQW 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02404 159 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 79 IPR000504 GO:0003723
Tsu02g02404 159 PANTHER GEO13361P1-RELATED 1 158 - -
Tsu02g02404 159 SMART rrm1_1 9 82 IPR000504 GO:0003723
Tsu02g02404 159 Gene3D - 2 107 IPR012677 -
Tsu02g02404 159 MobiDBLite consensus disorder prediction 82 105 - -
Tsu02g02404 159 SUPERFAMILY RNA-binding domain, RBD 8 118 IPR035979 GO:0003676
Tsu02g02404 159 MobiDBLite consensus disorder prediction 117 159 - -
Tsu02g02404 159 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723
Tsu02g02404 159 PANTHER RNA-BINDING PROTEIN GRP1A, PUTATIVE, EXPRESSED-RELATED 1 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02404 Tsu-Chr2 24501639 24503596 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02404 10 88 Eukaryotic Initiation Factors Gene Family AT2G23350 32.911 3.20e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02404 - K13195 ccaj:109800369 159.458