Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02400 ATGTTTCTTTCATGTCAAAAACACTCCCTTTACTTTCATTCTTCTTCAATCCACACTTCAAAAAACCCAAAACTCACAATTATCATCAATTGTCATAACCCaaatgaacaacaacaacacaaaaaccACCCTATTGCTAGaacacaaaattcaaaatcaacatcATTTCTCATTCAACACCTTtcacaaaaaaacaataatactaCTAACCCTTCATCCACTGAGCTACAAGACCCAACACccaatgaagaaaaaattaaacttttagaACTTTCTTTAGTAAGAAAAAGAACCCCTCAATTTCCTGGTTCAATTTATGCTCAATCTCCTAGTGATCCTGATGTGGGTTCTTCTCTTCCTCCTCTTCGTAGGCTTTTTCGATCGGGTGATAAAGAAGAGGAAAAGATGATTATGCAAGCTCTTGAGATTCGTAGGAAGGTTACTCAAGAAGTTTTTAAAGATGCAATGCGAAagggtaaatttggaattaCTTATAGTACTAATTTGGTTGATAGGTTGGGTGGTTTCATTGATTATGTTATGATTGAAGCTGCTAATTTGAAAAGATTACCGGAATATTCCAACTCTACTTTTAATTTACGCGCCAAAACTGTTATTGAAGATTCACAAGTTGTGCCACTTATCAGATGGTTGAAGCATAATTCGCTATCGTATCCAGAGATAGCTAAGCTTATTTTGATGTCAAGAGGGACACTTGAGTCCATAAGGAACCGTGTTGAGTGGTTGAAGTCGGTGCTGGTTAAGGGAGATTTTATCGGTGATGCAATGTTGAAGAGTGGAGATAATTTTTTGCAGCGGAGCGATGCGGAGTTGGATGAGATTGTTGAGTATTTAATGTCTAATGGAGTTAGGAGAGAATGGATGGGTTTTGTTTTGAGTCGGTGTCCGAAGTTATTATCTTATAGCTTGGAAGAAGTGAAGACTCGTGTGCAGTTCTATCTGGATATGGGTTTAGATGAGAAGGATTTTGGCACCATGGTTTTTGATTTTCCTAAAGCACTGGGACATTATACTCTCGAAGAAATGCACCGAAAGGTTGATTACTTGAAAGAATTCGGACTTGAAAGTAAGGATGTTGGTAAGTTGCTTGCATTTAGGCCAGAATTGATGGCATGCAGCATTGAAGAACGGTGGCAACCTCTTGTTAAGTATCTGTACTATTATGGGATTACCCGAGAAGGGATGAAGAGAATGCTTATCATTAAACCAATGGTCTTTTGCATTGACTTGGAGATGAATATTGTGCCAAAGGTGAAGTTTTTTCAGGACTTAGGGGTTCACAATGACGGGATTGCCAACATGCTTGTAAAATTTCCTCCTCTACTCACTTACAGTTTGTACAAGAAGATTAGGCCTGTGGTCATATTCTTGATGACCAAGGCTGGAGTCACTGAAGAATCTATTGGAAAGGTTGTTGCTCTTGGACCTCAACTCTTGGGATGCAACATAGTACATAAGCTCGAAGTaaatgtaaaatattatttgtctcTTGGCATACGCCTTCGGCAACTTGGTGAAATGATTGCTGACTTCCCGATGCTGCTCAGATACAATGCAGATGTTCTCCGTCCTAAGTATAAGTATTTGCGGAGAACCATGGTTCGAACTTTGCCAGATCTCATCGAGTTTCCAAGGTTTTTTAGCTATTCTCTTGAGGGTCGAATTATCCCAAGACACAAGGTTCTGGTGGAGAATCAGATTAATGTCAAGCTAAAATGCATGTTAGCTTGCACAGATGAAGAATTTGACAAAATGGTCAAGAATATGATTAGAAAACGCAACAAATTTCAATCTTCTGGCATGAAGGCAAATACCACTCATCCCCAATCTCTCATTACAGGGGATAATACTACCCCCCAGACGTAA 1887 0.3694 MFLSCQKHSLYFHSSSIHTSKNPKLTIIINCHNPNEQQQHKNHPIARTQNSKSTSFLIQHLSQKNNNTTNPSSTELQDPTPNEEKIKLLELSLVRKRTPQFPGSIYAQSPSDPDVGSSLPPLRRLFRSGDKEEEKMIMQALEIRRKVTQEVFKDAMRKGKFGITYSTNLVDRLGGFIDYVMIEAANLKRLPEYSNSTFNLRAKTVIEDSQVVPLIRWLKHNSLSYPEIAKLILMSRGTLESIRNRVEWLKSVLVKGDFIGDAMLKSGDNFLQRSDAELDEIVEYLMSNGVRREWMGFVLSRCPKLLSYSLEEVKTRVQFYLDMGLDEKDFGTMVFDFPKALGHYTLEEMHRKVDYLKEFGLESKDVGKLLAFRPELMACSIEERWQPLVKYLYYYGITREGMKRMLIIKPMVFCIDLEMNIVPKVKFFQDLGVHNDGIANMLVKFPPLLTYSLYKKIRPVVIFLMTKAGVTEESIGKVVALGPQLLGCNIVHKLEVNVKYYLSLGIRLRQLGEMIADFPMLLRYNADVLRPKYKYLRRTMVRTLPDLIEFPRFFSYSLEGRIIPRHKVLVENQINVKLKCMLACTDEEFDKMVKNMIRKRNKFQSSGMKANTTHPQSLITGDNTTPQT 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02400 628 Pfam mTERF 234 418 IPR003690 GO:0003690|GO:0006355
Tsu02g02400 628 Pfam mTERF 420 589 IPR003690 GO:0003690|GO:0006355
Tsu02g02400 628 MobiDBLite consensus disorder prediction 604 628 - -
Tsu02g02400 628 PANTHER CGI-12 PROTEIN-RELATED 65 613 IPR003690 GO:0003690|GO:0006355
Tsu02g02400 628 Gene3D Transcription termination factor 3, mitochondrial 360 604 IPR038538 -
Tsu02g02400 628 MobiDBLite consensus disorder prediction 62 79 - -
Tsu02g02400 628 MobiDBLite consensus disorder prediction 102 121 - -
Tsu02g02400 628 PANTHER TRANSCRIPTION TERMINATION FACTOR MTERF2, CHLOROPLASTIC 65 613 - -
Tsu02g02400 628 SMART mt_12 403 434 IPR003690 GO:0003690|GO:0006355
Tsu02g02400 628 SMART mt_12 439 471 IPR003690 GO:0003690|GO:0006355
Tsu02g02400 628 SMART mt_12 476 507 IPR003690 GO:0003690|GO:0006355
Tsu02g02400 628 SMART mt_12 261 291 IPR003690 GO:0003690|GO:0006355
Tsu02g02400 628 SMART mt_12 512 542 IPR003690 GO:0003690|GO:0006355
Tsu02g02400 628 SMART mt_12 296 326 IPR003690 GO:0003690|GO:0006355
Tsu02g02400 628 SMART mt_12 331 362 IPR003690 GO:0003690|GO:0006355
Tsu02g02400 628 SMART mt_12 367 398 IPR003690 GO:0003690|GO:0006355
Tsu02g02400 628 SMART mt_12 544 575 IPR003690 GO:0003690|GO:0006355
Tsu02g02400 628 MobiDBLite consensus disorder prediction 62 81 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Tsu02g02400 mTERF 7.6e-65 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02400 K15032 - mnt:21401514 825.854
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g02400 02 24481491 24487468 Tsu02g02400 02 24481491 24487468 ECH