Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02399 ATGCCCTCACGAGTGGAAGAATTAGAAAAGCTTTTGATTGTCGACTCAAATGATGATGTTCGAGTTGTAGGGATTTGTGGAATGGGAGGAATAGGGAAGACAACTCTAGCTACTGCCTTGTATGCAAAAATCTCTAGTCAATTTGATGGTTGTTGCTTTATTGATGATGTTAGTAAAATTTATGGAGGTTATGGCCTAATTGAAGTGCAAAAGCAGCTTCTTTTTCAAACTCTAAATGGAGAAGATCTTCAGATATTGAATCATTCTATGGCATCTAATTTTATTCAAACTAGGCTATCTCAAATAAAATCTCTTGTAGTTCTTGATAATGTTGATCAAGTTGAACAACTGGATAAATTGGCCATGAAACGAGAATGTTTAGGCACCGGGAGCAGAATTATTGTAATTGCTAGAGATAGCCATATTTTGAGAGAGCATGGAGTAGATGAAGTTTACAAAGTTCGACTATTGGATCATAAAAATGCCCTTCAATTGTTTTGTAGGAAAGCTTTCAAAAGTGATGATATCATGAGCGGTTACGCAGACTTGACAAATGATGTACTAAAATATGCCGACGGCCTTCCGTTAGCAATTAAAGTGTTGGGTTCATTTTTGTATGGTCGAGAAGTCTCAGAATGGAGAAGTGCATTGGTAAGATTAAGGCAGAATCCAAGGACAGATATTATGGATGTACTTAGAATTAGTTTTGATGGACTAGAGGATACCGAAAAGGATATATTTATGGATATTGCTTGTTTCTTCTCTGGAAAAGACGAGATACCTGTGaagaaaattttagattttcGTGGATTCCATCCTGAAATTGGTTTAAGAGTTCTCATTGATAAATCATTCATATCCTGTGAGGAAGGGGTAATTTCCATGCATGATTTGTTCAGAGAACTAGGCAAGTTCATCGTTAGAGAAAAGTCACCCAAAGAACCAAGAAAGTGGAATAGGATTTGGGACTACAAGAATGTTCACAATGTTATCTCAGAAAACATGGCAACAGAAAACCTTGAAGCCATAGTTCTGGGTGTTCCAGAAAATCGTGAAGAAGTAGAAGCAATGACAACATTGAGGACTGAAGCTTTAGCTCAAATGACTCGCCTTAAATTGCTCGTGTTGTGGAATTTGAAGTTCTCAGGAAGTCTCAATTTTCTTTCAAGTGAATTAGGGTACCTTTGTTGGGATGGATATCCTTTCACTTGTTTGCCGGCAAGTTTTGAGCCAGATAAACTTATTGAACTGATCCTATCTGGTAGCAACCTTAGGAAACTATGGGAGGGCACAAAGATGCACTTGAAATCCAATCCTGTCATTGGTCGGGTTGAGATTATTATTCCTAGAACTCAAATTCCAATGTGGTTCAATAAACAAAATGTGGGTAGTTCAATAACAAGTAGGAACTTTGCCATTATCCCCGTGCTTCTTGAAAAAGATCTGATCACAGTTGATTTAGATCACCtgttgaaaatattttacactagGGAAGAATTTATGGATCGTATAAGTTATATAACAAAGGGATTGCAAGATACTAGTGGTATTCAATTGGCAGCTTATGTTGAGTATCAACCCTATGGTTTGCATTTGGTGTTCAAAACGTAA 1611 0.365 MPSRVEELEKLLIVDSNDDVRVVGICGMGGIGKTTLATALYAKISSQFDGCCFIDDVSKIYGGYGLIEVQKQLLFQTLNGEDLQILNHSMASNFIQTRLSQIKSLVVLDNVDQVEQLDKLAMKRECLGTGSRIIVIARDSHILREHGVDEVYKVRLLDHKNALQLFCRKAFKSDDIMSGYADLTNDVLKYADGLPLAIKVLGSFLYGREVSEWRSALVRLRQNPRTDIMDVLRISFDGLEDTEKDIFMDIACFFSGKDEIPVKKILDFRGFHPEIGLRVLIDKSFISCEEGVISMHDLFRELGKFIVREKSPKEPRKWNRIWDYKNVHNVISENMATENLEAIVLGVPENREEVEAMTTLRTEALAQMTRLKLLVLWNLKFSGSLNFLSSELGYLCWDGYPFTCLPASFEPDKLIELILSGSNLRKLWEGTKMHLKSNPVIGRVEIIIPRTQIPMWFNKQNVGSSITSRNFAIIPVLLEKDLITVDLDHLLKIFYTREEFMDRISYITKGLQDTSGIQLAAYVEYQPYGLHLVFKT 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02399 536 Pfam NB-ARC domain 5 225 IPR002182 GO:0043531
Tsu02g02399 536 Gene3D - 156 240 IPR042197 -
Tsu02g02399 536 Pfam Leucine Rich Repeat 413 432 IPR011713 -
Tsu02g02399 536 SUPERFAMILY L domain-like 359 436 - -
Tsu02g02399 536 Gene3D - 1 150 IPR027417 -
Tsu02g02399 536 PRINTS Disease resistance protein signature 191 205 - -
Tsu02g02399 536 PRINTS Disease resistance protein signature 22 37 - -
Tsu02g02399 536 PRINTS Disease resistance protein signature 98 112 - -
Tsu02g02399 536 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 1 428 - -
Tsu02g02399 536 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 1 428 IPR044974 GO:0006952
Tsu02g02399 536 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 250 IPR027417 -
Tsu02g02399 536 SUPERFAMILY "Winged helix" DNA-binding domain 227 331 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02399 Tsu-Chr2 24479941 24482220 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02399 3 432 WRKY Transcription Factor Family AT5G45050 31.626 1.38e-62 220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02399 - - mtr:MTR_4g080777 714.146