Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02343 ATGGATGAAGATTACGGTTACAGCGACAACGACGACGATTATCATTTCTCCGATCAAGATGATTCTGAGCTCCAAAACGATCTCTACAATTTTCACTTGTCCTCTTCCACTGCTCAGGTGATTACGAAGGAATCACTGATAGCTGCACAGAAAGAGGAATTGCACAGAGTGATGGACATGCTTTCTATAAGACAACAAGATGCGCGCACACTGCTTATTTATCATCGTTGGGATGTGGACCATTTGTTTGAGGTTTATGTAGAAAAAGGGAAGGAATTTATGTTTGCTCAGGCTGGTGTTAGTGTGGATGAATATCGTAACTCTGACTCGCCGGTTAGTGCTGTAGTAATGTGTGAAATCTGCATAGACGATATTCCTAGTGAAGAAGCAACAAGAATGGACTGTGGTCACTGCTTTTGCAACTcttGTTGGACACAGCACTTTTATGTTAAGGTAAATGAGGGTCAAAGTAAACGCATCAGATGCATGGCTCACAAATGTAATTCAATTTGCGATGAAACTGTCGTAATAACTCTACTCGGTAGAAAGCACCCTGATATGGCAGAGAAATATGAACGCTTTCTTCTTGAATCCTACATCGACGACAATACAAAAGTTAAATGGTGTCCGAGCACGCCACATTGTGGGAATGCAATTCGTGCTGAGGGTGATGACTTGTGTGAGGTAGAATGTTCATGTGGTGAacaattttgtttcaattgCTTGTCAGAGGCACACTCACCCTGTTCATGTTTGATGTGGGAGCTTTGGCAACATGAGCGTCGTGATGAAGTAGAATCTGATAATTGGATAATTATTCATACGAGACCTTGTCCAAAGTGCCACAAACCAGTGGAGAAGAATGGTGGTTGTAATTGGGTCGGCTGTATTTGCGGCCAACCATTTTGTTGGTTGTGTGGTGGAGCTACTGGACAGGAGCATACCAATTATAGTATAGTTGGTCATGACTGTGGTCGCTACAAAGAACCTGAGAAAACAGCTGACCAAGAAAAGAGGAATCTCTATAGGTACAAACATTATTATAACCGATATAAAGCTCACAAATACTCCTTTAAGTTTGAAAGTAAACTAAAAGACATCATACAAGAGAAGATTCCTATTTTCGAAAAGAAACATTCTCAACGAAAAAAATCTGAACTCGGAGATTATAGCTGGGTAAACAATGGACTCTCTAGACTTCTCAGATCTAGGTGCATCCTTTCATACTCATATGCATTTGCATTTTATATGTTTGGAGATGAGCTTTTCAAAGAGGAAATGTCAGAAGCTGAAAGGGAAATAAAACATAACTTATTTGAGGATCAACAGCAGCAGTTAGAGGCTAATGTCGAAAGACTCTCTGAGATTTTGCCAGAGGCATTCAAATCCTTACAATATGGTAAGGTTATGAAAAGAAGGATGCAGATAATAACTCTGTCAACAGTTATTGACGatctttgtaaaaaaatGTATGAATGCATCGAGAATGATTTATTGGGTTCTGTTAATCTTGGTAGTATCCACATTATAGCACCATATAGATCAAAAGGCATAGAGAGGGCTTCATAG 1569 0.392 MDEDYGYSDNDDDYHFSDQDDSELQNDLYNFHLSSSTAQVITKESLIAAQKEELHRVMDMLSIRQQDARTLLIYHRWDVDHLFEVYVEKGKEFMFAQAGVSVDEYRNSDSPVSAVVMCEICIDDIPSEEATRMDCGHCFCNSCWTQHFYVKVNEGQSKRIRCMAHKCNSICDETVVITLLGRKHPDMAEKYERFLLESYIDDNTKVKWCPSTPHCGNAIRAEGDDLCEVECSCGEQFCFNCLSEAHSPCSCLMWELWQHERRDEVESDNWIIIHTRPCPKCHKPVEKNGGCNWVGCICGQPFCWLCGGATGQEHTNYSIVGHDCGRYKEPEKTADQEKRNLYRYKHYYNRYKAHKYSFKFESKLKDIIQEKIPIFEKKHSQRKKSELGDYSWVNNGLSRLLRSRCILSYSYAFAFYMFGDELFKEEMSEAEREIKHNLFEDQQQQLEANVERLSEILPEAFKSLQYGKVMKRRMQIITLSTVIDDLCKKMYECIENDLLGSVNLGSIHIIAPYRSKGIERAS 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02343 522 Pfam IBR domain, a half RING-finger domain 189 251 IPR002867 -
Tsu02g02343 522 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 8 501 IPR031127 GO:0004842|GO:0016567
Tsu02g02343 522 SUPERFAMILY RING/U-box 115 201 - -
Tsu02g02343 522 Pfam Ariadne domain 329 522 IPR045840 -
Tsu02g02343 522 ProSiteProfiles TRIAD supradomain profile. 114 328 IPR044066 -
Tsu02g02343 522 SUPERFAMILY RING/U-box 262 318 - -
Tsu02g02343 522 SUPERFAMILY RING/U-box 189 258 - -
Tsu02g02343 522 Gene3D - 247 499 - -
Tsu02g02343 522 Coils Coil 436 456 - -
Tsu02g02343 522 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 203 IPR013083 -
Tsu02g02343 522 ProSiteProfiles Zinc finger RING-type profile. 118 166 IPR001841 -
Tsu02g02343 522 SMART ibrneu5 189 251 IPR002867 -
Tsu02g02343 522 SMART ibrneu5 255 324 IPR002867 -
Tsu02g02343 522 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 8 501 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02343 Tsu-Chr2 23777918 23781094 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02343 58 522 ARIADNE family AT2G16090 63.753 0.0 613
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02343 K11968 - gmx:100783343 787.719