Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02342 ATGGAAGATTACGGTAGCAGCGACGATGATTATCAATTCTCCGATCAAGAAGATTCCGATGTCGAATTGGAAAACGATGATCGTAATTTTGAATTAGTCTCTTCCAAGGGTCCAACTGCTCAGGTGATTACGAAGGAATCACTGATAGCTGCACAGAAGGAGGATTTGCGCAGAGTGATGGATATGCTTTCTGTAAGACAACAACATGCGCGTACGCTGCTTATTTATCATCGTTGGGATGTGGACCATTTGTTTGAAGTTTATGTAGAAAGAGGGAAGGCGTTTATGTTTGCTCAGGCTGGTGTTAGTGTGCATGAATGTCGTGACTCTGACTCATcggttagtaagttagtaatgtGTGAAATCTGCATGGACGATGTTCCTAGTGATGAAGCAACAAGAATGGACTGTGGTCACTGCTTTTGCAACATCTGTTGGACACAACATTTTTGTGTCAAGATAAATGAGGGTCAAAGTAAACGCATCAGATGCATGGCACACAAATGTAATTCCATTTGTGATGAAGCTGTTGTAAGAACTCTACTCAGTAGAGAGCACCCTGATATGGCAGAGAAATATGAACGGTTTCTTCTTGAATCCTACATTGAAGATAATAAAAGAGTTAAATGGTGTCCGAGCACGCCGCATTGTGGGAATGCAATTCGTGTCGAGGGGGATGACTTGTGCGAGGTAGAATGTTCATGCGGTgaacaattttgttttaattgctTGTCAGAAGCACACTCCCCCTGTTCATGTTTAATGTGGCAACTTTGGGAAAAGAAGTGCCGGGATGAATCCGAAACTGTTAATTGGATAACAGTTCACACAAAGCCTTGTCCAAAGTGCCACAAACCGGTGGAGAAGAATGGTGGCTGTAATTTGGTCAGCTGTATTTGTGGTCAAGCATTTTGTTGGTTGTGTGGTGGAGCAACCGGTCGGGAGCATACCTGGTCAAGTATAGCAGGTCATAGCTGTGGTCGCTACAAAGAGCAAGAGAAAACAGCTGAGCGGGCCAAGAGGGATCTCTATCGGTACATGCATTATCATAACCGATATAAAGCTCACACAGACTCCTTTAAGCTTGAAAGTAAACTGAAAGGTCTCATACAAGCGAAAATTGCTgctttggaagaaaaaattgcTGAACGAAAAATTTCTGAACTCACAGATTATAGCTGGGTGCATAATGGACTTTCCAGACTTTTCAGATCTAGGCGTGTCCTTTCTCATTCATATGCTTTTGCATTTTATATGTTTGGAGATGAGCTTTTTAAAGAAGAAATGTCAGAAGCTGAAAGGGAAATAAAACAGAACTTATTTGAGGATCAACAGCAGCAGTTTGAAGCAAATGTTGAAAGACTCTCTAAGATTTTGGAGGAGCCTTTCGAAACCTTTGAAGATGCTAAGGTCATGCAGACAAGGATGGAGATAATAAATCTGTCAACACTTATTGACGgtctttgtaaaaaaatGTATGAGTGCATTGAGAATGATTTATTGGTATCTATTAATCTTGGTAGTATCCACAGTATAGCACCATATAAATCAAAGGGCATAGAGAGGGCTTCGGACTTTCCAGTTTGTTTTAGCAATAAAGCCAGCAATACGGGTGTAACAGCAGAGCTTAATCAGTCAGAAGAGAGTGGATGTTCTTCTCGTAAGCGAGCCCGAAAAGACGGTGGCTTTTTTGATCTAAACTTGCCAGCTGAGTTTGTAGACAGAAATTGA 1731 0.4003 MEDYGSSDDDYQFSDQEDSDVELENDDRNFELVSSKGPTAQVITKESLIAAQKEDLRRVMDMLSVRQQHARTLLIYHRWDVDHLFEVYVERGKAFMFAQAGVSVHECRDSDSSVSKLVMCEICMDDVPSDEATRMDCGHCFCNICWTQHFCVKINEGQSKRIRCMAHKCNSICDEAVVRTLLSREHPDMAEKYERFLLESYIEDNKRVKWCPSTPHCGNAIRVEGDDLCEVECSCGEQFCFNCLSEAHSPCSCLMWQLWEKKCRDESETVNWITVHTKPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGREHTWSSIAGHSCGRYKEQEKTAERAKRDLYRYMHYHNRYKAHTDSFKLESKLKGLIQAKIAALEEKIAERKISELTDYSWVHNGLSRLFRSRRVLSHSYAFAFYMFGDELFKEEMSEAEREIKQNLFEDQQQQFEANVERLSKILEEPFETFEDAKVMQTRMEIINLSTLIDGLCKKMYECIENDLLVSINLGSIHSIAPYKSKGIERASDFPVCFSNKASNTGVTAELNQSEESGCSSRKRARKDGGFFDLNLPAEFVDRN 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02342 576 MobiDBLite consensus disorder prediction 1 25 - -
Tsu02g02342 576 SUPERFAMILY RING/U-box 191 259 - -
Tsu02g02342 576 Gene3D - 249 501 - -
Tsu02g02342 576 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 5 517 - -
Tsu02g02342 576 ProSiteProfiles TRIAD supradomain profile. 116 330 IPR044066 -
Tsu02g02342 576 Pfam Ariadne domain 330 576 IPR045840 -
Tsu02g02342 576 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 5 517 IPR031127 GO:0004842|GO:0016567
Tsu02g02342 576 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 205 IPR013083 -
Tsu02g02342 576 Pfam IBR domain, a half RING-finger domain 191 253 IPR002867 -
Tsu02g02342 576 SUPERFAMILY RING/U-box 115 203 - -
Tsu02g02342 576 SUPERFAMILY RING/U-box 260 318 - -
Tsu02g02342 576 ProSiteProfiles Zinc finger RING-type profile. 120 168 IPR001841 -
Tsu02g02342 576 MobiDBLite consensus disorder prediction 1 27 - -
Tsu02g02342 576 SMART ibrneu5 261 326 IPR002867 -
Tsu02g02342 576 SMART ibrneu5 191 253 IPR002867 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02342 Tsu-Chr2 23761530 23765842 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02342 60 554 ARIADNE family AT2G16090 68.537 0.0 696
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02342 K11968 - gmx:100783343 967.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g02342 02 23761530 23765842 Tsu02g02342 02 23761530 23765842 ECH