Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02301 ATGGCTTTGACGATGAGGGCTGCAGTGGCGGCAGCGGCTGCGCCCCGCAGTTTACGCCGACTTTTCTGCACCAACCCAACCGCTTCTTCTCCCACTTTCCCTTTCACTTCAACGCCGCCTTCCGGAGCTCGACAGATGGCTGATCCCAGCACCAACCTCTTCGTCTCCGGGCTTAGCAAACGTACGACAACAGAGAATCTGAGGGCAGAATTTCAAAAGTTTGGTGAAGTTGTTCACGCTAGGGTGGTAACTGATCGAGTCTCAGGTTACTCTAAAGGGTTTGGTTTTGTGCAATATGCTACTCTAGAAGATGCTGCTAAGGGCATTGAAGGCATGGATGGCAAGTTTTTGGATGGCTGGGTTATATTTGCAGAGTATGCAAGACCAAGACCACCACCCGGAGAAGCTGCACACAGGTTGGAATATGAGAGAATTCAAAGTAAAGTTGTAGACTCATCTGTTATCAACGAAGGATTTAAGCTTGCTTTCTCTTTGTATTTGCGCTGTGAGGCTTTGGATATGGTGGTTGAGGGCTGTATCATGGCCGACGAAATTCAACGTAAGATTCCGGTTGAGGATAACATTGATTGGGTTGCCGACGATCCGAGAACGACGCCCAGTAAGTTTGAATCCGAGGAAAATTTCCCCGAAGACTTATTCACGGATATTGAAGACCCCGGACACGCGAACTGGGAGGTTCGGATCCCCGACGCTAGATTAAGGATTTGCTCGACATTCAAAAATGGTGGGTTTCCCATGTATCAGGTGGCTTTCGAGCACATGGGTCTCCGTTTGCCCTTCACTGATTTAGAGGTGGCGATCTTCAATCACCTGGAGCTATGTTCGTCTCAACTCCACCCCAATTCTCTGGCGTTTATACGTGCCTTTGAGATTGTGGCAGCGTACCTACAATTGGCGCCCACtatttctctattctttcaTCTCTTCGGCATCCAGCGTTCTCGTCCTAGGGGAAATACGACAGATAAGTGTGGCTGGGTGTCGTTGAAGCAACACAAGAAGTTCTTCGAGATCTTCGAGGAATCGCTGCGGGGTTTTAAGGACAAGTGGTTCGTTGTCCGCCCCATCACTTCAGTGGGTTGGAAAACTATTGTTGTTCGGGGTCCTAAGTTGGACTATGAAGGAAGGGTCGAGCATGGGGATGATGGTGAGCCCATAGAAGTCGACTGTGAGCGGTTCTCCTTCTGCTGGTCGACGAGACACTATGCACGGGAGGCGAAAAGCTTTTCATTTAGGAAGGGAGTATTGTCCCCAGAGGAGCTTGCCGATCTGAAGGCACTGGAGGATTTCGTAGAGGCCGAGAAGAAGAAGCGGCAGCTTGGCGCTTCCTCCTTGACTCCTAATATCTTCGGGCAAACTTCCCCTTCACCGTCCATCGAGGTGACGGGGGAAAGAAGGGTTGCTGAGGAAGTGACTGGTGATCGGAGGTCGCTAAAGACTGCTCGGGTTGAAGGAGGGGGAAGCGTGGTGTCTGGTCCTCATAGGCTGGTCCCGGGGAAGGCTGCGGAGGAGCTTGTCATTCCCCCTGCTATGGGGCTTGACTGCGTGGTGGATAGAAGGACGAGCATGAAGATTTCTGACGCTGACCAATCCATCCTGGCGTCCATGGGGCCAGAGTCTATAAGGAACGTGGTCGCGAGTCTTCGGTGGCCGTTTTCAAGCTCTTGCCAAAGCTTATGCAGATGCCGAGGGGAAAGTGACCAAGCTGGAGAAGGAACTCCACGACGCCAAGGAGGAGGAGGGAAGTTGAAGGAGAAGGTGAGTGAGCTCGAGAAAAAGCTATCCTCTCTGACCCTGACCTCTACTACTGATGAGGAGGAGAAGAAGGTGGATCCGACGGGCACATATGCTAAATTTAGCCGGGCATATCTGATCGCCAAAATATATGAAGTCGGGGACCTGCAATTAGAGGTTGCTTCCTCCAGCTTTCAGAATGCATTGGCATAA 1968 0.5097 MALTMRAAVAAAAAPRSLRRLFCTNPTASSPTFPFTSTPPSGARQMADPSTNLFVSGLSKRTTTENLRAEFQKFGEVVHARVVTDRVSGYSKGFGFVQYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPGEAAHRLEYERIQSKVVDSSVINEGFKLAFSLYLRCEALDMVVEGCIMADEIQRKIPVEDNIDWVADDPRTTPSKFESEENFPEDLFTDIEDPGHANWEVRIPDARLRICSTFKNGGFPMYQVAFEHMGLRLPFTDLEVAIFNHLELCSSQLHPNSLAFIRAFEIVAAYLQLAPTISLFFHLFGIQRSRPRGNTTDKCGWVSLKQHKKFFEIFEESLRGFKDKWFVVRPITSVGWKTIVVRGPKLDYEGRVEHGDDGEPIEVDCERFSFCWSTRHYAREAKSFSFRKGVLSPEELADLKALEDFVEAEKKKRQLGASSLTPNIFGQTSPSPSIEVTGERRVAEEVTGDRRSLKTARVEGGGSVVSGPHRLVPGKAAEELVIPPAMGLDCVVDRRTSMKISDADQSILASMGPESIRNVVASLRWPFSSSCQSLCRCRGESDQAGEGTPRRQGGGGKLKEKVSELEKKLSSLTLTSTTDEEEKKVDPTGTYAKFSRAYLIAKIYEVGDLQLEVASSSFQNALA 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02301 655 MobiDBLite consensus disorder prediction 571 592 - -
Tsu02g02301 655 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 51 129 IPR000504 GO:0003723
Tsu02g02301 655 PANTHER TRANSFORMER-2-RELATED 4 139 - -
Tsu02g02301 655 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3, MITOCHONDRIAL-LIKE 4 139 - -
Tsu02g02301 655 Pfam Putative gypsy type transposon 258 318 - -
Tsu02g02301 655 SUPERFAMILY RNA-binding domain, RBD 34 135 IPR035979 GO:0003676
Tsu02g02301 655 Gene3D - 30 138 IPR012677 -
Tsu02g02301 655 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 53 119 IPR000504 GO:0003723
Tsu02g02301 655 SMART rrm1_1 52 125 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02301 Tsu-Chr2 23284062 23292176 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02301 48 178 Eukaryotic Initiation Factors Gene Family AT4G34110 29.197 2.41e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02301 - - ccaj:109789173 204.912