Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02298 ATGCCTTCTCCTTCATTTCACAAGCTTATTCTACCATCCACTCTTGAAGCTAAGCAACTGAGGCTTCCAGAtgattttgtgaagaaatatggGGGCAATATGTCTTCGATTGTTACTCTCACAGTTCCTGATGGCAGCGTGTGGCGTGTaggattaaaaaaagaagacaacAAACTTTGGTTCGTCAATGGTTGGCATGAATTTGTTCAAAACTATTCCATTGCTACTGGATACTTGTTGTTATTCAGATACGAAGGGAAGTCGTCTTTCATCGTTAATATTTACAGTTTTGCTACTTCTGAGATTAACTATAAATCACCCGCACAAAGCAGTAACAAAGCGCTTCACTTTGCACAACGTCTTGAAATTTTCGAAGATTTGGAAGATGAAGATGCCATTGAAATGATGCATCTGTCGCCTACGAACCATACAAATAGCCCATTGCAAAACAAAGCTGTTTCTGGATCAGCCGATAAATTTACGCCTGGCAAATCTCATTCGCCTCCAGCACTGCAGAATCTGTTTAATGGATCTAAACTTAATAGCACAAACTCGGGAGAAGCTGAGAATACTCCTTCCAAAAGTGTCAAATCGCTAGACAACCAGATGACCCGAGATATAGGTCTCCAGTTTAATGTAGTTGAGTTTAAAAAGTCTAATGAAGAGGTGAAGTTGCGCACGGCTACTGATGAAAAGGTTAAAAAACCTGTGACAAAGAAGCGGAAATCAGATGTCCAGGAACCTCCTTCTGAACATGAAGATGAAGTAGAAATGCGCAATAGATTTTACGAAAGTGCATCTGCAAGGAAAAGAACTGTGACAGCTGAAGAAAGAGAAAAGGCCATGAATGAAGCAAAAGCATTTGAACCATCTAATCCTTTCTGTCGCGTCGTCCTGCGGCCCTCCTATTTATATAGGGGATGCATAATGTATCTACCATCCTGCTTTGCAGAGAAGAATTTGAACGGTATTTCAGGCTTTATCAAGCTTCAAATCTCTGATGGTGGGAAACAGTGGCAGGTTCGCTGTCTTTATAAAGACGGTAAAGCTAAGTTAAGCCAAGGGTGGTTTGAATTTGCATTAGAGAACAACTTAGGTGAAGGTGATGTCTGCGTGTTTGAGCTGGTTGCTGCAAAGGATGTGGTGCTGCAAGTTACTTTTTTTCGAATTACTGAGGATGAGGGACAGTTGAGCCCGCCAACTTTGCAGCAGAACCAACATGTGAGCCATGCTAAACTGTTGAAAGTCCCATTTAGCATGACTTGA 1266 0.4044 MPSPSFHKLILPSTLEAKQLRLPDDFVKKYGGNMSSIVTLTVPDGSVWRVGLKKEDNKLWFVNGWHEFVQNYSIATGYLLLFRYEGKSSFIVNIYSFATSEINYKSPAQSSNKALHFAQRLEIFEDLEDEDAIEMMHLSPTNHTNSPLQNKAVSGSADKFTPGKSHSPPALQNLFNGSKLNSTNSGEAENTPSKSVKSLDNQMTRDIGLQFNVVEFKKSNEEVKLRTATDEKVKKPVTKKRKSDVQEPPSEHEDEVEMRNRFYESASARKRTVTAEEREKAMNEAKAFEPSNPFCRVVLRPSYLYRGCIMYLPSCFAEKNLNGISGFIKLQISDGGKQWQVRCLYKDGKAKLSQGWFEFALENNLGEGDVCVFELVAAKDVVLQVTFFRITEDEGQLSPPTLQQNQHVSHAKLLKVPFSMT 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02298 421 MobiDBLite consensus disorder prediction 139 201 - -
Tsu02g02298 421 Pfam B3 DNA binding domain 9 95 IPR003340 GO:0003677
Tsu02g02298 421 Pfam B3 DNA binding domain 298 389 IPR003340 GO:0003677
Tsu02g02298 421 PANTHER B3 DOMAIN-CONTAINING 1 417 - -
Tsu02g02298 421 MobiDBLite consensus disorder prediction 166 201 - -
Tsu02g02298 421 ProSiteProfiles B3 DNA-binding domain profile. 5 98 IPR003340 GO:0003677
Tsu02g02298 421 PANTHER B3 DOMAIN TRANSCRIPTION FACTOR VRN1-LIKE PROTEIN 1 417 - -
Tsu02g02298 421 SMART B3_2 6 98 IPR003340 GO:0003677
Tsu02g02298 421 SMART B3_2 295 391 IPR003340 GO:0003677
Tsu02g02298 421 Gene3D - 1 98 IPR015300 -
Tsu02g02298 421 ProSiteProfiles B3 DNA-binding domain profile. 295 391 IPR003340 GO:0003677
Tsu02g02298 421 MobiDBLite consensus disorder prediction 226 256 - -
Tsu02g02298 421 Gene3D - 272 393 IPR015300 -
Tsu02g02298 421 SUPERFAMILY DNA-binding pseudobarrel domain 288 390 IPR015300 -
Tsu02g02298 421 MobiDBLite consensus disorder prediction 139 156 - -
Tsu02g02298 421 CDD B3_DNA 4 96 IPR003340 GO:0003677
Tsu02g02298 421 CDD B3_DNA 293 389 IPR003340 GO:0003677
Tsu02g02298 421 SUPERFAMILY DNA-binding pseudobarrel domain 3 96 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02298 Tsu-Chr2 23247529 23250696 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02298 1 396 B3 DNA Binding Superfamily AT3G18990 51.122 3.88e-127 370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tsu02g02298 B3 1.3e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02298 - - gmx:100813285 596.275
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g02298 02 23247529 23250696 Tsu02g02298 02 23247529 23250696 ECH