Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02297 ATGCCTTCTCCTTCATTTCACAAGCTTATTCTACCATCCACTCTTGAAGCTAAGCAACTGAGGCTTCCAGATGATTTTGTGATGAAATATGGGGGCAATATCTCTTCAATTGTTACTCTCACAGTTCCTGATGGCAGCGTGTGGCGTGTaggattaaaaaaagaagacaacAAACTTTGGTTCGTCAATGGTTGGCATGAATTTGTTCAAAACTATTCCATTGGTACTGGATTCTTGTTGTTATTCAGATATGAAGGAAAGTCGTCATTCATCGTTAATATTTACAGTTTTGCTACTTCTGAGATTAACTATAAATCACCTGCACAAAGCAGTAACAAAGCGCCTCACTTAGCAAAACATCTTGAAATTTTCGAAGATTTGGAAGATGAAGATTCCATTCAAATGATGCATTTGTCGCCTATGTACCTTACACATAGCCCATTGCAAAACAAAGCTGTTTCTGGATCAACCGAAAAATTTACGCCTGGCAAATCTCATTCGCCTCCAGCACTGCAGAATCTGTTTAATGGATCTAAACTTAATAGCACAAACTCGGGAGAAGCTGGGAATACTCCTTCCAAAAGTGCCAAATCGCTGGACAACCAGATGACCCGAGATATAGGTCTCCAGTTTAATGTAGTTGAGTTTAAAAAGTCTAATGAAGAGGTGAAGTTGCGTACGACTACTGATGAAAAGGTTAAAAAATCTGTGACAAAGAAGCGGAAATCAGGTCTACCATCCTGCTTTCTGTGA 753 0.3851 MPSPSFHKLILPSTLEAKQLRLPDDFVMKYGGNISSIVTLTVPDGSVWRVGLKKEDNKLWFVNGWHEFVQNYSIGTGFLLLFRYEGKSSFIVNIYSFATSEINYKSPAQSSNKAPHLAKHLEIFEDLEDEDSIQMMHLSPMYLTHSPLQNKAVSGSTEKFTPGKSHSPPALQNLFNGSKLNSTNSGEAGNTPSKSAKSLDNQMTRDIGLQFNVVEFKKSNEEVKLRTTTDEKVKKSVTKKRKSGLPSCFL 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02297 250 MobiDBLite consensus disorder prediction 226 250 - -
Tsu02g02297 250 PANTHER B3 DOMAIN-CONTAINING 1 195 - -
Tsu02g02297 250 PANTHER B3 DOMAIN TRANSCRIPTION FACTOR VRN1-LIKE PROTEIN 1 195 - -
Tsu02g02297 250 Pfam B3 DNA binding domain 9 95 IPR003340 GO:0003677
Tsu02g02297 250 MobiDBLite consensus disorder prediction 153 202 - -
Tsu02g02297 250 Gene3D - 1 98 IPR015300 -
Tsu02g02297 250 ProSiteProfiles B3 DNA-binding domain profile. 5 98 IPR003340 GO:0003677
Tsu02g02297 250 SMART B3_2 6 98 IPR003340 GO:0003677
Tsu02g02297 250 CDD B3_DNA 4 96 IPR003340 GO:0003677
Tsu02g02297 250 SUPERFAMILY DNA-binding pseudobarrel domain 3 96 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02297 Tsu-Chr2 23236579 23238503 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02297 1 177 B3 DNA Binding Superfamily AT3G18990 48.588 5.74e-49 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tsu02g02297 B3 4.3e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02297 - - gmx:100813285 314.694