Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02296 ATGGATCATGATCAACAAtacaagccatctttctttgctATCATCAAAGAAGGCTTCAACACCAACCGCATGAAAGTCCCAAAGAAGATTGTTATGAATTTGGGTGAAGAGTTGTGGAACAATGCTTTGATTTTTCTGATAGGTTCTTCTGGTGAGAAGTGGCAAATGAgtattttgaagaaagaaaatgacATATATCTGCAAGATAATGGTTGGCAAAAATTTCTGAAAGACAACTCGGTAATGCACAAAGAGCTCTTGCTTTTCACATATAAGGGAGAAAACAGGTTTGAGGTTCAAATGTTTGGTAAGAATGGATTGGAGAGACCGTGCTTCCAGAAAGAACAAGAAGTTGCAGCCCCAATTGTACCCGAGAGAACTACGAGTAGCCAACAAAAAACACCTGCTCGTGATAGCTTGTACATCAAGGAAGAAAACGAAGAAGAAGCTGCAGCAACAGTGGTGGTCAAGAGAAAGAGGGGTAGGCCAAGAAAAAATCCTCCTCCTGAGAGATGCGTCAAGAAAAAGGAAGCAGAAGTTGCAGCAACAATGGTGGCCAAATTAGGAATGGAGGATAGACCAAGAACAAATCGTTTTCCTGAGAGAGTATGTGTCAAGAAAAAAGATGCAGAAGCTGCGGCAACAACAGTGGCCAAAGGTATGAAGGATAGCCCAAGAAAAAATGCTTCTCCTGAGAGAGTATGTCTATGTGTCCCGAAAAAAGAAGCAGAAGCTGCAACAGCAACAATGGTGGACAAAGGAAGGAAGGATAGACCAAAATATGTTTCTCCTGAGAGAGTAGTCGTAGCAGAATCTGCAACAGCAACAATGGTGGACAAAGGAATGGAGGATAGACCAAAATATGTTTCTCCTGAGAGAGTATTCGTAGCCAAATCGGCAACAGCAACAATGGTGGACAAAGGAATGAAGGATAGACCAAAATATGTTTCTCCTGAGAGAGTATTCATAGCAGAATCTGCAACAGCAACAATGGTGGACAAAGGAATGGAGGATAGACCAAAATATGTTTCTCCTGAGAGAGTATTGGTAGCCAAATCGGCAACAGCAACAATGGTGGACAAAGGAATGAAGGATAGACCAAAATATGTTTCTCCTGAGAGAGTATTCGTAGCCCAAGCTGCAACAGCAACAATGGTAGCCAAAGGAATGAAGGATAGACCAAAATATGTTTCTCCTGAGAGAGTATTCGTAGCCGAAGATGCAACAGCAACAATGGTAGCCAAAGGAATGAAGGATAGACCAAGATATGTTTCTCCTGAGAGAGTATTCGTCGTGAAAAAAGAAGCAGAAGCTGCAACTGCAACAGCAACAATGGTGTCCAAAGGAATGAAGGATAGACCAAGAAATGCTTTTCCTGAGAGAGTATTCATCATGAATAAAGAAGCAGAAGCTGCAGCAACAATGGTGGCCAAAGGAATCAAGGATACACCAAGAAACTATGCTTCCCCTCAAAGTGTATGCCTCAAGAAAACAGAAGCAGTAGCTGCAGCAACAATGGTGGCTAAAGGAATGAAGGGTAGACCAAGAAGAAATTCTGCTCCTGTTGTTATTGTAATAGACtga 1584 0.4091 MDHDQQYKPSFFAIIKEGFNTNRMKVPKKIVMNLGEELWNNALIFLIGSSGEKWQMSILKKENDIYLQDNGWQKFLKDNSVMHKELLLFTYKGENRFEVQMFGKNGLERPCFQKEQEVAAPIVPERTTSSQQKTPARDSLYIKEENEEEAAATVVVKRKRGRPRKNPPPERCVKKKEAEVAATMVAKLGMEDRPRTNRFPERVCVKKKDAEAAATTVAKGMKDSPRKNASPERVCLCVPKKEAEAATATMVDKGRKDRPKYVSPERVVVAESATATMVDKGMEDRPKYVSPERVFVAKSATATMVDKGMKDRPKYVSPERVFIAESATATMVDKGMEDRPKYVSPERVLVAKSATATMVDKGMKDRPKYVSPERVFVAQAATATMVAKGMKDRPKYVSPERVFVAEDATATMVAKGMKDRPRYVSPERVFVVKKEAEAATATATMVSKGMKDRPRNAFPERVFIMNKEAEAAATMVAKGIKDTPRNYASPQSVCLKKTEAVAAATMVAKGMKGRPRRNSAPVVIVID 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02296 527 Pfam B3 DNA binding domain 17 103 IPR003340 GO:0003677
Tsu02g02296 527 PANTHER B3 DOMAIN-CONTAINING 5 184 - -
Tsu02g02296 527 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0625400-RELATED 5 184 - -
Tsu02g02296 527 CDD B3_DNA 9 102 IPR003340 GO:0003677
Tsu02g02296 527 Gene3D - 3 106 IPR015300 -
Tsu02g02296 527 SUPERFAMILY DNA-binding pseudobarrel domain 6 106 IPR015300 -
Tsu02g02296 527 SMART B3_2 11 105 IPR003340 GO:0003677
Tsu02g02296 527 ProSiteProfiles B3 DNA-binding domain profile. 9 105 IPR003340 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02296 23 170 B3 DNA Binding Superfamily AT3G18990 26.966 1.04e-09 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tsu02g02296 B3 5.2e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02296 - - mtr:MTR_4g068300 223.402