Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02276 ATGAACATGGAAGATCAATTTTCCTCTAAGGACAATGGAATTAGCTTTTGGACACCATTGGATAATGGAATGAAAAGTTCAATAACTTCAGATGACATGTTTAACAATATCTCTGAGCTTATGAACTTCGATAACTATGCCGGTTGGTGCAACAGTTCATCATCATTAACTGATCAAACTCTAATTAAtgatctttcatcattttcataTTCACCACATGATGGATTGAATTTAGTTGAACAAATTAATAGTCCATTTTTTATGACAGAAATTGGTGGAAATTATAGCTCCACCAGTTATGAGGAAAAAGTACTTTTACAACAAATGGAAACACAATTTGGTTTCTTAGATAATGCAAATGaaacaactaataataatttagatTCACAACAAGAACAAAATGGCTTATTTGATATGTGCAATTACGTAATATCGAAATCGCCTAGTTGGTCACTTGATGAGAGAATGATGAGTGCTTTATCCTTCTTTAAAGAATCTGCTGGTGGAGGAATATTAGCACAAGTTTGGGTACCTATAAAGTATGGTGATGAATTTGTATTAACCACAAGTAATCAACCTTATTTACTAGACCAAAAGCTTGCAGGTTATCGCGAAGAAGGACAAGGTATATCTGGGAAAGCTCTTCAATCAAATCATCCATTTTTCTATACCGATGTGAAGGCTTATGATATTAGTGAATATCCTCTTGTTCATCATGCGCGAAAATATAACTTGAATGCTGCAGTTGCAACTAGGTTAAGGAGTACTTATActaatgatgatgattatgtGTTAGAATTCTTTCTTCCTATCAATATGATAGGGAGTTCAGAACAACAGCTTTTATTAGATAATTTGTCAGATACTATGAGGAGAATTTGTAAGAGTTTGAGAACAGTTTCAGAAGGTGAATTACGAGGGATAGAAGGTTCTCGAGATGGTTTTCTAAAGGAAAATATCTCAGGGTTTTTTCCAATGTCTAAGGGGAACTCTCAGATAGCATTTAGTACTGGTGATCCTGATTTATTCCAGATGCCATTGATGGCAGGTTCACATAGTCAGGTAACAAGTGAATCAAGAAAGCAGGCCgagaaaagaagaaatgcaGTGGAGAAGAATGTTAGCTTGAGTGTTCTCCAACAGTACTTTTCTGGTAGTTTGAAGGATGctgcaaaaaaaattggggTTTGTCCAACAACTCTGAAGAGAATATGCAGGCAACATGGAATTTCAAGATGGCCATCGCGCAAGATAAATAAAGTGAATCGTTCATTGAAGAAAATACAAACTGTCCTTGATTCTGTCCAAGGAGTTGAAGGTGTGCTGAAGTTTGACCCTCACACTGGTGGATTTGTTGCAGGAGGGTCAATCATCGAGCAAATTGGTACACATAATAAAAATCTCATGTTCCCCGAGAAAATCTCTGTAGAGAACTCGGCCATTAAGTTGGAGGGTGATGGTGTTCTTATCTCTAATTCATGTGAGGGTGACTTGAAGAAAGATAATAATGCTTCTTCTGTTGACTATATTCAAGATTCAACATCATGGCTTTGGACAAAGACTCGTGAATGTCCTAAACAAAAATCTATAGATTCTGTTCTTGAAAAAGAGGAAGATCAATGTGGTTTGAACAACAGTAGTTTGCATGATATTGCCTCAAACAGTTCATTCTCATTGATAGAACTTGGTTTGGATGAAGGAAAAGGAGTTGATGAACCTAACCACCCTACTTCTTCAAGCATGACAGATTCTTCCAATGCATCTGGATCAATGGTTCGTGGAAGTTCATCAGGCTCTCAAAGCATTGAGAACCATAAGAACTCAAAGATCAAATCAATTTGTGTTGATAGTGAATCGAAATTTGCCGTCAAAGCTACTTTTAGAGGCGATACTATTCGTTTCAAGTTTGATCCATGTTTAGGTTGTTTCCAACTCTATGAAGAAGTTGCAACAAGGTTTAAATTGCGGAATGGTTCATTCCAACTCAAGTATCttgatgatgaagaggaatggGTGCTGTTGGTGAATGACTCAGATTTGAAGGAATGTGTAGAAGTTTTAAGTGATAGTGGTACACATTGTGTGAAGTTACTTGTTCGCGATATACACGGTAATAGTTGA 2121 0.3479 MNMEDQFSSKDNGISFWTPLDNGMKSSITSDDMFNNISELMNFDNYAGWCNSSSSLTDQTLINDLSSFSYSPHDGLNLVEQINSPFFMTEIGGNYSSTSYEEKVLLQQMETQFGFLDNANETTNNNLDSQQEQNGLFDMCNYVISKSPSWSLDERMMSALSFFKESAGGGILAQVWVPIKYGDEFVLTTSNQPYLLDQKLAGYREEGQGISGKALQSNHPFFYTDVKAYDISEYPLVHHARKYNLNAAVATRLRSTYTNDDDYVLEFFLPINMIGSSEQQLLLDNLSDTMRRICKSLRTVSEGELRGIEGSRDGFLKENISGFFPMSKGNSQIAFSTGDPDLFQMPLMAGSHSQVTSESRKQAEKRRNAVEKNVSLSVLQQYFSGSLKDAAKKIGVCPTTLKRICRQHGISRWPSRKINKVNRSLKKIQTVLDSVQGVEGVLKFDPHTGGFVAGGSIIEQIGTHNKNLMFPEKISVENSAIKLEGDGVLISNSCEGDLKKDNNASSVDYIQDSTSWLWTKTRECPKQKSIDSVLEKEEDQCGLNNSSLHDIASNSSFSLIELGLDEGKGVDEPNHPTSSSMTDSSNASGSMVRGSSSGSQSIENHKNSKIKSICVDSESKFAVKATFRGDTIRFKFDPCLGCFQLYEEVATRFKLRNGSFQLKYLDDEEEWVLLVNDSDLKECVEVLSDSGTHCVKLLVRDIHGNS 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02276 706 SUPERFAMILY CAD & PB1 domains 616 704 - -
Tsu02g02276 706 SMART PB1_new 620 702 IPR000270 GO:0005515
Tsu02g02276 706 PANTHER PROTEIN NLP8 17 205 IPR045012 GO:0003700
Tsu02g02276 706 PANTHER PROTEIN NLP8 488 702 IPR045012 GO:0003700
Tsu02g02276 706 ProSiteProfiles PB1 domain profile. 620 702 IPR000270 GO:0005515
Tsu02g02276 706 ProSiteProfiles RWP-RK domain profile. 360 441 IPR003035 -
Tsu02g02276 706 MobiDBLite consensus disorder prediction 568 604 - -
Tsu02g02276 706 Pfam RWP-RK domain 373 421 IPR003035 -
Tsu02g02276 706 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 205 478 - -
Tsu02g02276 706 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 488 702 - -
Tsu02g02276 706 MobiDBLite consensus disorder prediction 573 604 - -
Tsu02g02276 706 Pfam PB1 domain 621 701 IPR000270 GO:0005515
Tsu02g02276 706 Gene3D - 616 700 - -
Tsu02g02276 706 PANTHER PROTEIN NLP8 205 478 IPR045012 GO:0003700
Tsu02g02276 706 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 17 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02276 Tsu-Chr2 22983737 22988233 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02276 172 702 NLP Transcription Factor Family AT2G43500 45.470 5.54e-141 434
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Tsu02g02276 PB1 1.4e-16 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02276 - - aprc:113864503 642.114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g05321 02 61866072 61871353 Tsu02g02276 02 22983737 22988233 PCT