Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02261 ATGCCGTTTCCGACGAAACCAACGAGGCCACTCCATGAAACCGGCAGAGATTCAGAGGAATCTTCTACCCCTTCGAACAACCTATGGGTTGGAAATCTAACGCCGGACGTTAGAGATTCCGATCTGATGGATCTATTCGCTCAATACGGCGCTCTCGATAGCGTTACATCTTATTCCGCTCGCAGTTACGCTTTCGTGTTCTTCAAACGTATCGAAGATGCAAAAGCCGCTAAAAACGCTCTTCAAGGCTTCTCTTTTCGTGGCAAttcattgaaaattgaatttgcTAGACCGGCAAGGCCATGTAAACAACTTTGGGTGGGTGGAATTAGCCCAGCTGTTACAAAGGAAGACTTGGAAGCTGACTTCTGTAAATTTGGTAAAATTGAGGATTACAAGTTCCTCAGAGACAGAAATACTGCATGTGTTGAATTTTTCAATTTGGACGATGCTATTCAGGCAATGAAATTTATGAATGGAAAACGTATCGGTGGGGAAAATATTCGTGTCGACTTCCTCCGGTCAAATTCTACAAAAAAAGATCAATTGCTTGATTATGGACAGTTCCAAGGAAAAAGCTCAGGGCCTACTGATTCCTATTCTGGACAAAAAAGGCCACTGAATTCACAGCCTCTAATGGGGAGGAAGGGTGATGGTCAACCCAGTAATATTTTGTGGATTGGTTATCCTCCCAATGTTCAGATTGATGAGCAAATGCTCCACAATGCCATGATTCTATTTGGTGAAATTGAGAGAATCAAGAGTTTTCCTTCAAGGAATTATTCATTTGTTGAATTTAGAAGTGTTGATGAAGCCCGACGTGCAAAAGAGGGCCTTCAAGGACGCCTCTTCAATGATCCTCgcataacaattaatttttcaaacGGTGACCAGGCGCATGGCAAAGATTACCCTGCCTTTTATCCTGGAAATAATGGGCCAAGACCTGATTTATTCCTAAACGAGCATTCATATCGACCGTTACAAATGGATTTATTCGGTCATAATCGTCCCATGGTTCCAAATAATTTTCCTGGACATTTGCCAACTGGCGGTATTGTTGGTCCAAACATACAAATGCGGCCTTTTGGTCCTCAAAGTGGTCCTGAATCTGTTGTTTCTGGTCCTGAGTTTATCGAGAATAGTACACTACACAAATTTCAGGATGGTAGCTCGGCAAATAAGATGGGTCCAAACTGGAAAAGGCCATCTCCTCCTGCACCAGGGTTGCTTTCTTCTCCTGTACCAGGTGCTAGGCTTCCTGCAAGATCTGCCTCTGGTGCATGGGATGTACTTGACATAAACCATAATTCTAGAGATTCCAAGCGCTCTAGGATAGATGGTGCATTACCTAATGATGATCCTTATGGAGGAAGGGGTATCCTTGGTCCAGCAAGCACGAGGAATACAGGTGGAGTACATGCTTCGGTCCAACCCAGTGGTCTTGATCATATATGGCGCGGACTTATTGCAAAAGGAGGAACGCCTGTTTGTCGTGCTAGATGCGTGCCTGTTGGGAAAGGGATCGGGACAGAGCTTCCTGAAGTTGTTGATTGCTCAGCTAGAACAGGATTGGACACACTTGAAAAACACTATGCTGAAGCAATTGACTTTGAGATTGTTTTCTTTCTGCCTGATAGCGAAGAGGATTTTGCTTCGTACACTGAATTCCTACGCTACCTTGGTGCAAAATATCGTGCCGGTGTTGCCAAGTTTATTGACGGTACAACTTTATTCTTGGTACCTCCTTCTGATTTCCTGACAAAAGTTTTGAAAGTCACTGGCCCTGAACGTCTATATGGCGTTGTTCTCAAGTTTGCACCAGTACCAAGTGGTGCGCCCGTGCACCAACCACAGCATTTGCCTGCACCGTCAAATCAATATATGAAACAGAGGCCTCCTTCACAGGCTGAATATGATATGAATCCTGCAAAGGAGGAACAAGTTTTGCCAATGGATTACAACAGAATGTTGCATGAGGATTCTAAGCTTCCTGCTAAACAAGTATATCCGCCTACAGGTGGGCCTCCTTCAGTTCAGTCTGCAGCTCCAGATTATGCTCCAAACACTGCTGCTTCTGGGTCTCAAGCTGGAGTTGCACTGACACCCGAGCTTATTGCGACTTTAGCTTCTCTTCTTCCTACAAATGCACAATCATCTGCTACTGATGGTGCCATGTCAGCTGTAGGCTCCTCAACTGCGAAGCCTCCATTTCCTCATGGGGCAGCTAATGATGGGAACCAATCTCAATTATGGAAACAGGATCATCAAATTGCAGATCAATCCATTCATCCACCTCAGCAGTTTAGGAATATGTATAACAGTCATAATGCTCATTATCAGCCTTATCCGCCAGCATCAGCTCCTGGTCACACAGCTCAAGTCTTCTCTGGCAGTTCTCATATTCAAGATAATGCTGTTAGCCAGCAACAACAAGGAATTGTTTCATCCAGACACATGTCTAATTTTTTGACACCTACTCAAAGTGGACAGGTAGCTGCATCCTCCCATTTCAGTCATCAGTATCAGGGTGATGTTCCCCCCAATACTCAGAAAGGCTTTGGTGTGGTGCCGGGAAGTGATGCCTCTGTTTTATACAATTCTCAGGCTTTTCAGCAACCAAATAGTAACCCCCAACTTTTCCAGCAACCTAATAATTCTATTGCCTTATCTAGTCACGTTAACAGTGCCAATCCTCAGCATCAACCTGCCATGCAATATACTGCTGAACAAATAAACTCAAACCCTCACATTCAGCAGCATCCTTCCTTGGGAGTTGCTCAAGGCACCCCAGAATTAGAGGCTGATAAGAACCAGAGATACCAGACAACATTACAATTTGCTGCCAATCTTCTACTCCAAATACAGcagcaacagcagcagcagcaaacACAAGGAGGACATCAACAATGA 2913 0.4353 MPFPTKPTRPLHETGRDSEESSTPSNNLWVGNLTPDVRDSDLMDLFAQYGALDSVTSYSARSYAFVFFKRIEDAKAAKNALQGFSFRGNSLKIEFARPARPCKQLWVGGISPAVTKEDLEADFCKFGKIEDYKFLRDRNTACVEFFNLDDAIQAMKFMNGKRIGGENIRVDFLRSNSTKKDQLLDYGQFQGKSSGPTDSYSGQKRPLNSQPLMGRKGDGQPSNILWIGYPPNVQIDEQMLHNAMILFGEIERIKSFPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITINFSNGDQAHGKDYPAFYPGNNGPRPDLFLNEHSYRPLQMDLFGHNRPMVPNNFPGHLPTGGIVGPNIQMRPFGPQSGPESVVSGPEFIENSTLHKFQDGSSANKMGPNWKRPSPPAPGLLSSPVPGARLPARSASGAWDVLDINHNSRDSKRSRIDGALPNDDPYGGRGILGPASTRNTGGVHASVQPSGLDHIWRGLIAKGGTPVCRARCVPVGKGIGTELPEVVDCSARTGLDTLEKHYAEAIDFEIVFFLPDSEEDFASYTEFLRYLGAKYRAGVAKFIDGTTLFLVPPSDFLTKVLKVTGPERLYGVVLKFAPVPSGAPVHQPQHLPAPSNQYMKQRPPSQAEYDMNPAKEEQVLPMDYNRMLHEDSKLPAKQVYPPTGGPPSVQSAAPDYAPNTAASGSQAGVALTPELIATLASLLPTNAQSSATDGAMSAVGSSTAKPPFPHGAANDGNQSQLWKQDHQIADQSIHPPQQFRNMYNSHNAHYQPYPPASAPGHTAQVFSGSSHIQDNAVSQQQQGIVSSRHMSNFLTPTQSGQVAASSHFSHQYQGDVPPNTQKGFGVVPGSDASVLYNSQAFQQPNSNPQLFQQPNNSIALSSHVNSANPQHQPAMQYTAEQINSNPHIQQHPSLGVAQGTPELEADKNQRYQTTLQFAANLLLQIQQQQQQQQTQGGHQQ 970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02261 970 MobiDBLite consensus disorder prediction 720 756 - -
Tsu02g02261 970 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 103 175 IPR000504 GO:0003723
Tsu02g02261 970 MobiDBLite consensus disorder prediction 1 30 - -
Tsu02g02261 970 CDD RRM3_Spen 225 295 - -
Tsu02g02261 970 PANTHER FLOWERING TIME CONTROL PROTEIN FPA 4 969 - -
Tsu02g02261 970 PANTHER RNA RECOGNITION MOTIF-CONTAINING 4 969 - -
Tsu02g02261 970 Pfam SPOC domain 479 597 IPR012921 -
Tsu02g02261 970 MobiDBLite consensus disorder prediction 666 693 - -
Tsu02g02261 970 Gene3D - 101 182 IPR012677 -
Tsu02g02261 970 Gene3D - 10 100 IPR012677 -
Tsu02g02261 970 MobiDBLite consensus disorder prediction 187 216 - -
Tsu02g02261 970 SMART rrm1_1 27 94 IPR000504 GO:0003723
Tsu02g02261 970 SMART rrm1_1 224 292 IPR000504 GO:0003723
Tsu02g02261 970 SMART rrm1_1 104 171 IPR000504 GO:0003723
Tsu02g02261 970 MobiDBLite consensus disorder prediction 614 638 - -
Tsu02g02261 970 MobiDBLite consensus disorder prediction 187 208 - -
Tsu02g02261 970 MobiDBLite consensus disorder prediction 389 413 - -
Tsu02g02261 970 CDD RRM3_Spen 105 174 - -
Tsu02g02261 970 Gene3D - 213 303 IPR012677 -
Tsu02g02261 970 SUPERFAMILY RNA-binding domain, RBD 14 100 IPR035979 GO:0003676
Tsu02g02261 970 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 105 169 IPR000504 GO:0003723
Tsu02g02261 970 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 92 IPR000504 GO:0003723
Tsu02g02261 970 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 235 289 IPR000504 GO:0003723
Tsu02g02261 970 MobiDBLite consensus disorder prediction 439 474 - -
Tsu02g02261 970 CDD RRM3_Spen 28 97 - -
Tsu02g02261 970 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 223 296 IPR000504 GO:0003723
Tsu02g02261 970 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 26 98 IPR000504 GO:0003723
Tsu02g02261 970 SUPERFAMILY RNA-binding domain, RBD 100 196 IPR035979 GO:0003676
Tsu02g02261 970 SUPERFAMILY RNA-binding domain, RBD 200 302 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02261 Tsu-Chr2 22681366 22689554 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02261 1 350 Eukaryotic Initiation Factors Gene Family AT4G34110 21.465 5.18e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02261 - - mtr:MTR_4g068120 1615.13