Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02255 ATGACAACTTCATACCCCATTGTTGATTCTCTTCCTGTTGGATTCAGATTCAGACCAACAAATGAAGAGCTAGTTAACCACTACCTCAAAAACAAGTTACTTGGTAATGATTCCAGTGTCATAGATGAAGTTGATTTTTGTAAGTTTGAACCTTGGGACTTACCAGCATGGGATCAATGGAAAGAAGGCATGGAAGCAACGATAATCAAACTGTTGGTAGCGGAAACGACGTTTCTCAGTCACGCGCTTCTTCTTCAACCTATGGACGCAGAGGACGATCATGTTTTTGTGGTGTTCGTACAATACTCTTGA 312 0.4103 MTTSYPIVDSLPVGFRFRPTNEELVNHYLKNKLLGNDSSVIDEVDFCKFEPWDLPAWDQWKEGMEATIIKLLVAETTFLSHALLLQPMDAEDDHVFVVFVQYS 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02255 103 Pfam No apical meristem (NAM) protein 12 58 IPR003441 GO:0003677|GO:0006355
Tsu02g02255 103 ProSiteProfiles NAC domain profile. 11 103 IPR003441 GO:0003677|GO:0006355
Tsu02g02255 103 SUPERFAMILY NAC domain 8 58 IPR036093 GO:0003677|GO:0006355
Tsu02g02255 103 PANTHER NAC DOMAIN-CONTAINING PROTEIN 14-RELATED 11 56 - -
Tsu02g02255 103 Gene3D NAC domain 20 81 IPR036093 GO:0003677|GO:0006355
Tsu02g02255 103 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 11 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02255 Tsu-Chr2 22600947 22601790 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02255 8 56 NAC Transcription Factor Family AT4G35580 64.706 7.59e-18 75.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Tsu02g02255 NAM 1.6e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02255 - - mtr:MTR_8g023840 90.1225