Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02254 ATGACCGCTGAGGAAATTAGTGCCATGGAATTTGTAAGTGAGGCTCAGGCTTATGATTTTTATTACCAATATGCAAGACGTAAAGGTTTTGCCATTCGGAGAAGCTCTACTAAGCATAAAGGGCCCACCGGTAATCGAATCATAGTAATGAGGGAGTTCGTATGCAACAGGGAAGGCTTAAGAAACAAGAAGCACTTGACTAGGGTGGATAGGCGTAGAGAACACCGTCGGGTTAGTCGTACTAAATGCACAGCTAGGCTACGTGTGCTCTACAGAaccaaagaaaacaaatatgtATTGTCAATATTTAATGAGACTCATAACCATGAATTAACTCCAGCTAAGGTTGTCCATTTACACCCTGTTTATCGTAACATTTCTAAATCAGATAAAGCTCAAATTAATGGTCTTCATACACATGGGATCAGAACTTGTCATATAATGGGATACATGGTTGCTCAAAAGGGAGGATATACTGATGTTGGTTTtacaaaaaaagatttgtacaattATTTCGATAAAAAGATGCGTGCTATTGTTAAAGATGGTGATGTTTCTGCTGCTTTAAATTATCTGAATGTGAAATCATCTACTGATCCCATGCTATATGCAGAGCATTCTGTCAATGGCGAAAGGCGTTTGAAAACACTTTTTTGGGCAGACAGAATAAGTAGATCTGATTATTTCTGTTTTGGTGATGTTGTTGCGTTTGACACAACatataagaaaaacaaatacaattatCCACTGGTTATTTTTTCTGGGTGCAGCAACCACTTACAAACTGTCATATTTGGCGTTGCATTGGTGTCGGATGAAACGACTGAGACGTATAAGTGGTTGCTCGAGACCTTTTTAGAGTGCATGCAAAATAAATATCCAAAGGGAGTTGTCACAGACAGGGATGGGGCCATGAGGGAGGCTATAAAGCAGATATTTCCTGATGCAAACCATAGAAAATCAATGTTCACAAACTTTACACCTGaggaatttgaagaattttggtCAAATCTACTGAAGGATACTGGACTTGAATCAAATGCTTGGGTTGCCAAAACATATGAGAACAAGTTACTTTGGGCTACTGCATATCTACGTGAAAAGTTCTTTGGTCGTATAAGAACTACGTCTCAATGTGAAGCAATCAATGCAATAATCAAGAATTATGTAAGGAAGAAAGGGTGCATTTATGAATTTATGCATAATTTTGAACAGGCATTGCTAGGGTACAGAAACAATGAACTAGTTGCTGATTTTAAATCCAAGTTTACAGATCCTGTGTTGTTAAGTCATCTGGATTTGATTGAGGCCGATGCTGCTAGAATTTACACGGCAGAGGTTTTTATGGAAGTAAAAGAACAAATATCGAAGGTTGTTGCATTAATTCGGAAGGAACGGTTTACAATGGGGGATACGAAGATTTATATGTTGACAAAATATTGTGATTCTGATTATGAAGGACAAACTGCATCTGATGTTTCGAGTCAAAAACTTCGGTGTTCCTGTAGATTGTTCGAGTCTCGCGGGCTTCCATGTTCTCACATCTTTTATGTGATGAAGGAAGAAAGTATTGATCACATTCCTGCTAGTTTGGTTTTGAGCCGTTGGACCAAGGATGCCAAAGTTGGGTTCTTGAACATGAATTCTAATGGGGACGTAGATTCCAAAATGATGGAGCAAGCTCGGTTTAGTGCTTATTGTTCTGCTTTTACTGCTTTTTGCCAAAAAGCTTCCAAAAAGAATGGTGTTTATGGGGATATAATGCATGACATAATGAAACTCCATCAAAAGTATTGTGATGATGAGGACCCTGATGATGAGGACCCCGGAAACAAAAAGGTAGGTGATCCAAAGATTGTGAATGGCAAAGGAGCTCCTAAGAGAAAAAAGACGCGCGTGAAAAGCATCAGACACTTCGAAGGGGCTAAGGAATATTGGAGTTGGGCGCAAGTTGAAGGATCCAAAGTTGTTTTCTTTAGTGGTAAGCTTTACTTAGTTGAGTCTTGTAATGTCGGTTCAAAGTCGTGTTTTAAATGA 2037 0.3775 MTAEEISAMEFVSEAQAYDFYYQYARRKGFAIRRSSTKHKGPTGNRIIVMREFVCNREGLRNKKHLTRVDRRREHRRVSRTKCTARLRVLYRTKENKYVLSIFNETHNHELTPAKVVHLHPVYRNISKSDKAQINGLHTHGIRTCHIMGYMVAQKGGYTDVGFTKKDLYNYFDKKMRAIVKDGDVSAALNYLNVKSSTDPMLYAEHSVNGERRLKTLFWADRISRSDYFCFGDVVAFDTTYKKNKYNYPLVIFSGCSNHLQTVIFGVALVSDETTETYKWLLETFLECMQNKYPKGVVTDRDGAMREAIKQIFPDANHRKSMFTNFTPEEFEEFWSNLLKDTGLESNAWVAKTYENKLLWATAYLREKFFGRIRTTSQCEAINAIIKNYVRKKGCIYEFMHNFEQALLGYRNNELVADFKSKFTDPVLLSHLDLIEADAARIYTAEVFMEVKEQISKVVALIRKERFTMGDTKIYMLTKYCDSDYEGQTASDVSSQKLRCSCRLFESRGLPCSHIFYVMKEESIDHIPASLVLSRWTKDAKVGFLNMNSNGDVDSKMMEQARFSAYCSAFTAFCQKASKKNGVYGDIMHDIMKLHQKYCDDEDPDDEDPGNKKVGDPKIVNGKGAPKRKKTRVKSIRHFEGAKEYWSWAQVEGSKVVFFSGKLYLVESCNVGSKSCFK 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02254 678 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 4 320 - -
Tsu02g02254 678 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 320 585 - -
Tsu02g02254 678 Pfam MULE transposase domain 234 323 IPR018289 -
Tsu02g02254 678 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 4 320 IPR031052 GO:0006355
Tsu02g02254 678 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 320 585 IPR031052 GO:0006355
Tsu02g02254 678 SMART 26again6 498 525 IPR006564 GO:0008270
Tsu02g02254 678 Pfam FAR1 DNA-binding domain 19 112 IPR004330 -
Tsu02g02254 678 MobiDBLite consensus disorder prediction 600 632 - -
Tsu02g02254 678 Pfam SWIM zinc finger 497 515 IPR007527 GO:0008270
Tsu02g02254 678 ProSiteProfiles Zinc finger SWIM-type profile. 485 523 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02254 Tsu-Chr2 22583949 22587097 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Tsu02g02254 FAR1 1.5e-18 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02254 - - ccaj:109792835 768.844