Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02252 ATGAAAATTCAGTGTGATGTTTGTGAGAAAGCTCCTGCAACAGTGATTTGTTGTGCAGATGAAGCTGCTTTGTGTGCTAAATGTGATGTTGAAGTTCATGCTGCTAATAAGCTTGCTAGCAAGCATCAAAGGCTTCTTCTTCAATGTTTATCTAACAAGCTTCCCAAATGTGATATATGCCAAGATAAGCCAGCTTTCATATTTTGTGTTGAAGATAGAGCACTGTTCTGCAAAGACTGTGATGAACCAATTCATGTAGCTGGTAGTCTTTCTGCTAATCACCAGCGCTTCCTCGCTACTGGTATCCGCGTGGCTTTGAGTTCTAGTTGCACCAAAGACAATGAGAATAGCCAAGTTGAACCATCTAATCCAGACACACAACATGTTCCTGGCAAAGTTCCTCCTCAGCAAGTTCCAAGTTTCACATCATCTTGGGCTGTTGATGACTTACTGCAATTTACCGACTTTGATTCACCAGACAAAGTAAGACATGTTTATTTTTCGCTATTGTAG 513 0.4074 MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPKCDICQDKPAFIFCVEDRALFCKDCDEPIHVAGSLSANHQRFLATGIRVALSSSCTKDNENSQVEPSNPDTQHVPGKVPPQQVPSFTSSWAVDDLLQFTDFDSPDKVRHVYFSLL 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02252 170 PANTHER B-BOX ZINC FINGER PROTEIN 24 1 167 - -
Tsu02g02252 170 SMART bboxneu5 52 99 IPR000315 GO:0008270
Tsu02g02252 170 SMART bboxneu5 4 47 IPR000315 GO:0008270
Tsu02g02252 170 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Tsu02g02252 170 CDD Bbox1_BBX-like 5 47 - -
Tsu02g02252 170 Gene3D Classic Zinc Finger 1 92 - -
Tsu02g02252 170 Pfam B-box zinc finger 52 95 IPR000315 GO:0008270
Tsu02g02252 170 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Tsu02g02252 170 MobiDBLite consensus disorder prediction 114 137 - -
Tsu02g02252 170 CDD Bbox1_BBX-like 56 98 - -
Tsu02g02252 170 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Tsu02g02252 170 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02252 Tsu-Chr2 22544804 22547508 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02252 1 162 Orphan Transcription Factor Family AT1G06040 66.864 5.29e-72 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Tsu02g02252 zf-B_box 7.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02252 - - gmx:100779183 302.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g05308 02 61771684 61773436 Tsu02g02252 02 22544804 22547508 PCT