Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02236 atgtaTCCCAAACGTTCTAGTCTAGATGATCCTGATTCCCGGCCGGTGCGCACAAGTGATAGGATCAAGACCAGGCCACCAGTTTATAACCGTGCACCGTTCTTGTATTACAACTCAAATATTAGGCGCCCCAGGAAAAGCAAGAATAAGACAAGAACAGCAGCTTCGCAGATTGCTAAGATGCTGCGTCCAGGGAATCGAAAAGCACGTGATTTGAATACTAATTCTGGCTCTGGCAACCTTCGGCGCTCAACCAGGGAGAGAAGGGTTAATGTAAATCTTATGGAGTTTGCAGACAGCTCTGGATCTGAGGATGCAGATTTAATGAGACCTTCATATCGGCCATTGAGAAACCGGATTAGCAACAGTGTCAGCCGGGATGGTGTTGTATCTTCTAAACGCAAAAGAGCTGTGGATACTAAATCAGCACCTCGACGTGAAGGTCTACGGCCTCGTCGATCGAAGGCTGCTGGTAGAGAAAGATTAATTTCAGAATCAGATGATGATCAAGACCTTTCAGAGGAGAAAGTTGAACAAGATGAAACAGAAAATGGAAATGATGTTGAAGAAAATGATGCAGAAGATGGCCATAATGAGATGGAGGGGGATGCTGAGGGTGAAGATGAAGGCGAGGATGAAGGTGATGaggatggtgatgatgatgaagatggtgaAGAAGAGCAGGATGGAAGAAGGCGCTATGATCTTCGAAATCGTGCAGATGTCCGCAGGTTCTCTATGGAGGAAGGGAAGGCGCGGCCAAGGTCTCCTCGTAGAGTGTTACATCAAGGTATGGGAACCAAGGTCAACAGGGATGTAAGGAAGGGTGGATCAAGAGTTCACAAGCGCCATCGCTTGACAAGGCCGGAAGATTCTGATGACTCCCTTCTTGTGGATGAGTTGGACCAAGGCCCTGCTATTCCATGGGGTCGAGGTGGAAGCAGATCTGGCCCACCTTTTCTTTTTGGGGGTGTAGACACACATGGAACAACAGCTTGGGGATTAAACCTTGCTGCATCGGGTTGGGGTCATCAGGGTGATGCTTTTGCTACACTGACTTCAGGGATTCAAACTGCTGGTCCAAGCTCTAAGGGAGGGGCAGATATCCAACCCTTGCAGATTGATGATAGTGTAAGTTTTGATGATATAGGTGGACTCTCTGAATACATCGATGCTCTAAAGGAAATGGTTTTCTTTCCATTATTGTATCCAGATTTTTTTGCAAGTTACCACATAACTCCACCTAGGGGTGTATTGTTATGTGGGCCCCCTGGCACAGGGAAAACATTGATTGCAAGAGCTTTGGCCTGTGCTGCTTCCAAAGCTGGCCAGAAGGTTAGCTTTTACATGCGCAAAGGAGCAGATGTGCTAAGCAAGTGGGTTGGTGAGGCCGAAAGACAACTGAAACTTCTATTTGAGGAGGCACAAAGGAATCAACCTtctattattttctttgatgAAATAGATGGGCTTGCACCTGTGAGATCTAGCAAGCAAGAACAAATTCACAATTCCATTGTGTCCACTTTGCTTGCTTTGATGGATGGCCTTGATTCTCGTGGACAAGTTGTTTTAATTGGAGCTACCAACAGGATTGATGCTATTGATGGAGCCTTGCGACGTCCTGGCAGATTTGATCGTGAATTTAACTTTCCCTTGCCTGGTTGTGAGGCACGTGCTGAAATATTAGACATTCATACTCGCAAGTGGCAGCATCCTCCTCCAGAGGAACTGAAAAAGGAACTTGCTGCTAGTTGTGTAGGTTATTGTGGTGCTGACCTAAAGGCTCTCTGTACTGAAGCGGCCATTCGTGCTTTCCGTGAAAAATATCCACAGGTTTATACAAGTGATGACAAATTTGTAATTGATGTTAATTCTATCAGGGTAGAAAAGTGTCATTTTATTGAAGCAATGTCTACAATTACTCCTGCTGCTCATAGAGGAGCTATTGTGCACTCTAGGCCATTGTCTCTAGTAGTTCAACCATGTCTTCAGAGACATCTGGAGAAAGCCATGAGTACTATATCTGATATTTTCCCTCCAGTATCTGTTGCATCAGAATTGACCAAACTTTCAATGCTTTCGTATGGGTCTGCAATTCCACTTGTATATCGACCTAGGCTTCTACTTTGTGGTGGTGAAGGCACAGGGCTGGATCATCTTGGGCCTGCGGTTTTACACGAACTGGAAAAATTTCCTGTACATTCATTAGGACTTCCATCTCTTCTGTCAGATCCTAGTGCAAAAACACCGGAGGAGGCGTTGGTACATATATTTGGCGAAGCTAGAAGAACAACACCATCAATTCTCTATCTACCACAGTTTGATGTTTGGTGGGAAACTGCTCATGAACAGCTCAGAGCTGTTCTCCTGACTATGCTAGAAGAATTGCCATCTGACTTACCTATCTTACTTCTTGGTACATCCTCAGTGGCACTTGCTGATGTTGAGGAAGTGCCTACTTCAGTTTTCCCTCATCGCTCAATTTATCAAGTGAACATGCCATCTATCGAAGACaggacctcattttttgatcgTTTAATAGAAGCTGCTATGTCGATATTGTTGGAGCGAATCAGCAGGAAATCCCAGGATACAGGACGCCTTTCGGAACTTCCCAGGGCACCAAAATTGGCAAGTGGTCCAAAGGCGTCTGAGCTAAAAGCAAAGGTCGAAGCTGAGCAGCATGCACTCCGTAGGTTGAGAATGTGCCTCAGAGATGTTTGCAACCGGATATTGTATGACAAACGATTTAATGCCTTCCATTTTCCAGTCTCAGATGAAGATGCGCCTAATTATCGCGACATTATACAGAACCCAATGGACATTGCTACCATTTTGCAGCATGTTGATAACGGCAACTATATTACATGTGCTGCATTCCTGCAGGACATCGATCTTATTGTTTCCAATGCAAAGGCTTACAATGGAGATGACTACAATGGTACTAGGATTGTCAGTAGAGCTTGTGAGCTCCGTGATGCGGTGCATGGGATGCTCTCTCAAATGGATCCAGCACTGGCTGCATATTGTGACAAGATTGCTAGCCAAGGTGGCCCAGTTCATTTGCCTGACGAATTAGGGGATACTACATTCCCTGCTACTCCTGTTGTACAGATGGGCACCACTACTAGAATGAGTGCTCGACTTCGCCATGTCCAACCAGAGGTTAATATGGATCAGGGTTACGAAGTATTGAAGCGGACTAAGAAGATCGGTGATGGTGTACATGCAGAAGACAAATTGCAGCAAGATTCAATACCGACAAAGTCCTCCCAGGAGCAGCATCAGGTACAAGAAGAGGTGGATTCTGAAAGGACGGAGCCTGTAGCAATGGATGGAGATTTGGATGGATCTTGTCCAAATAACCTTGCTGATGGTAGCAGTCTTCATGATATCACAATGTTAGATGGTGAATTTTCAAGACAAGTCGAGTCTGTCAAGCAGCATTTCATTAAGCGCACTGAAAAATACAGCATCCCACAACTTGAAAGGCTTTACACGAGAATTATGAAGGGTGTGTTTGAAACCAGAGATAAAGGATTGAATGACGATGACCTCAAAACTTCGGTTTTGGggtttttgttgaaatttgtaGAGGATGATGCCAATTTCTGA 3618 0.4409 MYPKRSSLDDPDSRPVRTSDRIKTRPPVYNRAPFLYYNSNIRRPRKSKNKTRTAASQIAKMLRPGNRKARDLNTNSGSGNLRRSTRERRVNVNLMEFADSSGSEDADLMRPSYRPLRNRISNSVSRDGVVSSKRKRAVDTKSAPRREGLRPRRSKAAGRERLISESDDDQDLSEEKVEQDETENGNDVEENDAEDGHNEMEGDAEGEDEGEDEGDEDGDDDEDGEEEQDGRRRYDLRNRADVRRFSMEEGKARPRSPRRVLHQGMGTKVNRDVRKGGSRVHKRHRLTRPEDSDDSLLVDELDQGPAIPWGRGGSRSGPPFLFGGVDTHGTTAWGLNLAASGWGHQGDAFATLTSGIQTAGPSSKGGADIQPLQIDDSVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRIDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWQHPPPEELKKELAASCVGYCGADLKALCTEAAIRAFREKYPQVYTSDDKFVIDVNSIRVEKCHFIEAMSTITPAAHRGAIVHSRPLSLVVQPCLQRHLEKAMSTISDIFPPVSVASELTKLSMLSYGSAIPLVYRPRLLLCGGEGTGLDHLGPAVLHELEKFPVHSLGLPSLLSDPSAKTPEEALVHIFGEARRTTPSILYLPQFDVWWETAHEQLRAVLLTMLEELPSDLPILLLGTSSVALADVEEVPTSVFPHRSIYQVNMPSIEDRTSFFDRLIEAAMSILLERISRKSQDTGRLSELPRAPKLASGPKASELKAKVEAEQHALRRLRMCLRDVCNRILYDKRFNAFHFPVSDEDAPNYRDIIQNPMDIATILQHVDNGNYITCAAFLQDIDLIVSNAKAYNGDDYNGTRIVSRACELRDAVHGMLSQMDPALAAYCDKIASQGGPVHLPDELGDTTFPATPVVQMGTTTRMSARLRHVQPEVNMDQGYEVLKRTKKIGDGVHAEDKLQQDSIPTKSSQEQHQVQEEVDSERTEPVAMDGDLDGSCPNNLADGSSLHDITMLDGEFSRQVESVKQHFIKRTEKYSIPQLERLYTRIMKGVFETRDKGLNDDDLKTSVLGFLLKFVEDDANF 1205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02236 1205 SMART bromo_6 898 1005 IPR001487 GO:0005515
Tsu02g02236 1205 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 702 930 IPR027417 -
Tsu02g02236 1205 SMART AAA_5 414 555 IPR003593 -
Tsu02g02236 1205 Gene3D - 890 1018 IPR036427 GO:0005515
Tsu02g02236 1205 Gene3D - 376 646 IPR027417 -
Tsu02g02236 1205 CDD Bromo_AAA 898 1007 - -
Tsu02g02236 1205 MobiDBLite consensus disorder prediction 129 166 - -
Tsu02g02236 1205 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 377 642 IPR027417 -
Tsu02g02236 1205 Pfam ATPase family associated with various cellular activities (AAA) 418 553 IPR003959 GO:0005524|GO:0016887
Tsu02g02236 1205 Pfam AAA+ lid domain 580 617 IPR041569 -
Tsu02g02236 1205 MobiDBLite consensus disorder prediction 1 21 - -
Tsu02g02236 1205 MobiDBLite consensus disorder prediction 1 27 - -
Tsu02g02236 1205 MobiDBLite consensus disorder prediction 64 87 - -
Tsu02g02236 1205 PRINTS Bromodomain signature 946 964 IPR001487 GO:0005515
Tsu02g02236 1205 PRINTS Bromodomain signature 964 983 IPR001487 GO:0005515
Tsu02g02236 1205 PRINTS Bromodomain signature 930 946 IPR001487 GO:0005515
Tsu02g02236 1205 MobiDBLite consensus disorder prediction 167 226 - -
Tsu02g02236 1205 MobiDBLite consensus disorder prediction 1096 1112 - -
Tsu02g02236 1205 ProSitePatterns AAA-protein family signature. 523 541 IPR003960 GO:0005524|GO:0016887
Tsu02g02236 1205 PANTHER AAA DOMAIN-CONTAINING 1 1200 IPR045199 -
Tsu02g02236 1205 Pfam Bromodomain 912 979 IPR001487 GO:0005515
Tsu02g02236 1205 ProSiteProfiles Bromodomain profile. 921 983 IPR001487 GO:0005515
Tsu02g02236 1205 PANTHER BNAC08G44480D PROTEIN 1 1200 - -
Tsu02g02236 1205 MobiDBLite consensus disorder prediction 100 237 - -
Tsu02g02236 1205 MobiDBLite consensus disorder prediction 270 298 - -
Tsu02g02236 1205 SUPERFAMILY Bromodomain 894 1009 IPR036427 GO:0005515
Tsu02g02236 1205 CDD AAA 414 553 - -
Tsu02g02236 1205 Gene3D - 554 639 - -
Tsu02g02236 1205 MobiDBLite consensus disorder prediction 1081 1118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02236 Tsu-Chr2 22403178 22409953 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02236 364 618 Calmodulin-binding Proteins AT3G56690 36.293 1.30e-40 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02236 K22531 - gmx:100787765 1989.16