Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02230 atGACACCACGCACCGATGAATACGAACAAGATAACAATGACCTCAATGCCACCACcgacgatgatgatgacgacgacGGTGGTCTGAAAGAAGACATGGCTGCCCTCGCGCGAGCCTGTATGTTCAACGTCGACGATGAAACTCAATTTCAAGAAGATCCACTTTTGGCCTCCGGAGACGCTATTGTCCCCTTCACTGTTACAACCGACTCTGACTCCGATGAACAGAATGACCTAGAATGTCTCAAGAGAGTTCAGAGTCTCTACCAGACTAATAAGGGCACTCTTCCTCCTCCTCAGCCGACTACAGCTGCGTCTGACGATGACGAAGATGACATCGAAACTGTTCGCGCCATTTTCAAACGGTTTTCTGCTTATGATGGAGGTGGAAGAGAAGCATGGGATGAGGGGAATCAGAATCAGGCCTCGAGTTTAATCGGTGACAACTCAGATGCCGATGAACTGTGTCCTGATTCTCTATTACCTGATAATGACGCCAAATTGCTGATTAAACCATGTGGTTTCGATGAGAGTTGTGAAAATGACGCCGACTTGTCTTCTAAATTACCGAAGAAAAGATCAAGCTTTCCTCCGTCAGCTCAAGCTTTTATTGATGCTGTCAAGAAGAATAGAGCTCTGCAGAAATTTCTTAGAAGTAAGTTAATTGAAATTGAAGCAAAAATTGAGGAAAACAAAAAGTTAAGAGACAAAGTTAAACTCCTTAAGGATTTCCAGGTTTCATGCAGTAAAAGAACGGCGAGTGCTTTATCATTGAAGAACGATCCGCGTGTTCAGTTAATATCATCTAAGAAGTCTGTTGCAACAAATAAGTCAAAAGTATCTGCAATGTGTTATGGCCCAGATGAGAATTCTCATGTTGCTAACTATAAGATGGTATTGGAAAGATTTCCGCTTTCATTGGATCGGAAAAAATGGTCAAATAAGGAAAGGGAAAATCTTTCCAAGGGAATTAAGCAACAATTCCAAGAAACAATGCTTCAAATTTCAGTAGATAGAATGAGTTCAGGTTGCAATCTTCACATGGACAGCATAATTGAATCAGTTAAAGATATTGAAATTACACCAGAGAGGATTCGAGAATTTTTACCTAAAGTTAATTGGCATCGATTGGCTTCTATGTATGTTGCTGGCCGTACCGGTGGTGAATGTGAATCAAGGTGGTTGAATTGTGAAGACCCTTTGATCAACCATGGCCCATGGACTTTAGAAGAGGATAGGTCACTTTTGATTATCGTCCAAGATAAGGGCATCAGAAACTGGTTTGATATTGCTGTATCATTGGCCACAAACAGGATTCCATTTCAATGCTTGGCACGATTCCAAAGGAGTTTAAATTCTTCGATGATAAATAGTGAATGGACTGAGGAAGAAGACGCCCAACTTTGTTCTGCTGTTGCATATTTTGGTGATAGTAATTGGCAGAATGTTGCTTCTGTGTTAGAACGGCGCACGGGAACCCAGTGCTCAAATAGATGGAAAAAATCAATTTGTCCTATGAGAAAAGGGAGTTTTACTCCTGAGGAGGATGAACGTCTTACAGTAGCAGTCATGTTGTTTGGCCGGAAGTGGAATCAAATAGCCAAATATGTTCCTGGCCGGATCCAATCTCAGTGTAGGGACAGATACCTTAATAGTTTGGATCCTTCTTTGAAATGGGGTGGGTGGACTGAGGAAGAGGATTTAAGATTAGAAGCTGCAATCACCAAGTATGGATATTGCTGGTCTAAGGTTGCTGAAGATGTACCTCCCCGCACCGATTCCCAATGCCGAAAGAGATGGAAGGTCATATGTCCTGAACAAGTTCCTCTTCTTCAAGAAGCAAGAAAGCGGCAAAGGTCTCTTCTTGCCAGTAACTTTGTCGATCGAGAATCTGAACGTCCTTTACAAATGGTAGTAGTTTCACCATCTGATGTCGGTGCTGAAAATCTCCAAAGGAAGCGGAAGAGACAGACGAGCGGCGTCCCCAAGAAAGTGAAGTCAAAAAAACATGCAAAAAGGACTCAACTTGTTACCAAAGAAGTACAAGATGTAGGTCTCAGGAAAGAGAGGTCTAAAAGACATGCAAAGAAGAGATCATCCTGTTCCAAGGATGTACAAGATATAGTTCCCAAGAAAGAGAAGCCTAAAAGACATTCCAAGAAGGCTCGAATTTGTCCCGAGGAAGTACAATATAAAGCAGCATATAGTGATAAGGTCAAGACTTGTGGTGGAAGTGCTCCCTTCCTTGTACCGAGCAATATTCCCAAGAAAAGGAGATCTAAAAGACGTGCTAGAAAGGCTCAAATTCGTCCTGAGGAAGTAGATGGAGACAACATAACACTTGCATGCTTTTTGCAGAAGATCAAGCCCTGTATCAAGAGTTCGGAAACTCAAGATGGAAACAAGGTCAAGCCCTGTATGAAGAGTTCGGAAACTCAAGATGGAGACAACATAACACTTGCATGCTTTTTGCAcaacaaatcaaagaaaaaactaTCTAAATGTACCAAAAATGCTAGCCAGGGTTCGTCTTCCTCTAAGACAAAAACTGTATCTAAGCAGGTTGAAAATCAAATCTCATGTGGTGAGCAACACAGATTGTCTCTGTCATGTGATATTGATGGAACTAAAGATTTGCTAATGCAAGCGGAGGTTGATTCTAACAGACAAGTGAGAAAACTGGAAAGTGCAGCAAATGCAGCTCGAAAACCAGAGGATGCACACAATTTGAATGGTGATAACCAGGATAGGCCTCTTAAGTTCTATgtgagaaagagaaagaaattgagCCAAGCTATCGAAGGACGCGGTGCTTGCTCTCCCTCCAAATTGAAAAATGGATCTGCGTAA 2850 0.4109 MTPRTDEYEQDNNDLNATTDDDDDDDGGLKEDMAALARACMFNVDDETQFQEDPLLASGDAIVPFTVTTDSDSDEQNDLECLKRVQSLYQTNKGTLPPPQPTTAASDDDEDDIETVRAIFKRFSAYDGGGREAWDEGNQNQASSLIGDNSDADELCPDSLLPDNDAKLLIKPCGFDESCENDADLSSKLPKKRSSFPPSAQAFIDAVKKNRALQKFLRSKLIEIEAKIEENKKLRDKVKLLKDFQVSCSKRTASALSLKNDPRVQLISSKKSVATNKSKVSAMCYGPDENSHVANYKMVLERFPLSLDRKKWSNKERENLSKGIKQQFQETMLQISVDRMSSGCNLHMDSIIESVKDIEITPERIREFLPKVNWHRLASMYVAGRTGGECESRWLNCEDPLINHGPWTLEEDRSLLIIVQDKGIRNWFDIAVSLATNRIPFQCLARFQRSLNSSMINSEWTEEEDAQLCSAVAYFGDSNWQNVASVLERRTGTQCSNRWKKSICPMRKGSFTPEEDERLTVAVMLFGRKWNQIAKYVPGRIQSQCRDRYLNSLDPSLKWGGWTEEEDLRLEAAITKYGYCWSKVAEDVPPRTDSQCRKRWKVICPEQVPLLQEARKRQRSLLASNFVDRESERPLQMVVVSPSDVGAENLQRKRKRQTSGVPKKVKSKKHAKRTQLVTKEVQDVGLRKERSKRHAKKRSSCSKDVQDIVPKKEKPKRHSKKARICPEEVQYKAAYSDKVKTCGGSAPFLVPSNIPKKRRSKRRARKAQIRPEEVDGDNITLACFLQKIKPCIKSSETQDGNKVKPCMKSSETQDGDNITLACFLHNKSKKKLSKCTKNASQGSSSSKTKTVSKQVENQISCGEQHRLSLSCDIDGTKDLLMQAEVDSNRQVRKLESAANAARKPEDAHNLNGDNQDRPLKFYVRKRKKLSQAIEGRGACSPSKLKNGSA 949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02230 949 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 460 501 IPR017930 -
Tsu02g02230 949 Pfam Myb-like DNA-binding domain 561 601 IPR001005 -
Tsu02g02230 949 Pfam Myb-like DNA-binding domain 508 551 IPR001005 -
Tsu02g02230 949 MobiDBLite consensus disorder prediction 895 913 - -
Tsu02g02230 949 CDD SANT 562 601 IPR001005 -
Tsu02g02230 949 ProSiteProfiles Myb-like domain profile. 399 451 IPR001005 -
Tsu02g02230 949 MobiDBLite consensus disorder prediction 90 110 - -
Tsu02g02230 949 ProSiteProfiles Myb-like domain profile. 554 604 IPR001005 -
Tsu02g02230 949 ProSiteProfiles Myb-like domain profile. 452 503 IPR001005 -
Tsu02g02230 949 ProSiteProfiles Myb-like domain profile. 506 553 IPR001005 -
Tsu02g02230 949 SMART sant 558 606 IPR001005 -
Tsu02g02230 949 SMART sant 308 400 IPR001005 -
Tsu02g02230 949 SMART sant 403 453 IPR001005 -
Tsu02g02230 949 SMART sant 456 505 IPR001005 -
Tsu02g02230 949 SMART sant 507 555 IPR001005 -
Tsu02g02230 949 CDD SANT 459 501 IPR001005 -
Tsu02g02230 949 SUPERFAMILY Homeodomain-like 435 503 IPR009057 -
Tsu02g02230 949 CDD SANT 510 553 IPR001005 -
Tsu02g02230 949 Coils Coil 217 237 - -
Tsu02g02230 949 Gene3D - 560 605 - -
Tsu02g02230 949 Gene3D - 401 450 - -
Tsu02g02230 949 Gene3D - 451 502 - -
Tsu02g02230 949 MobiDBLite consensus disorder prediction 895 920 - -
Tsu02g02230 949 CDD SANT 406 451 IPR001005 -
Tsu02g02230 949 MobiDBLite consensus disorder prediction 1 30 - -
Tsu02g02230 949 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 20 879 - -
Tsu02g02230 949 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 399 455 IPR017930 -
Tsu02g02230 949 SUPERFAMILY Homeodomain-like 380 432 IPR009057 -
Tsu02g02230 949 MobiDBLite consensus disorder prediction 646 722 - -
Tsu02g02230 949 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 554 608 IPR017930 -
Tsu02g02230 949 MobiDBLite consensus disorder prediction 674 689 - -
Tsu02g02230 949 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 507 553 IPR017930 -
Tsu02g02230 949 Gene3D - 505 559 - -
Tsu02g02230 949 SUPERFAMILY Homeodomain-like 505 600 IPR009057 -
Tsu02g02230 949 Pfam Myb-like DNA-binding domain 407 468 - -
Tsu02g02230 949 MobiDBLite consensus disorder prediction 656 673 - -
Tsu02g02230 949 MobiDBLite consensus disorder prediction 13 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02230 Tsu-Chr2 22341743 22344592 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02230 189 642 MYB-Related Transcription Factor Family AT3G18100 52.866 2.27e-172 516
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu02g02230 Myb_DNA-bind_6 5.2e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02230 K09422 - gmx:100818474 959.903