Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02228 ATGGACTCCGAAGATGATATGCATGATGCTAATGATATGGAGTCtcttgattatgatgatgatgatttctaCAGTGGTGATACCGAAGGTGCTACCATAGATTATTACagtgattatgatgatgatgatgctggTGATTACTTCGATGATGCTGATAAAATTGAGTCTCGTCGACCTGAGCAAAACTTTACCATCTTGAAGGAATCCGATATCCGAATGAGACAGGAAGACGACATCAATACAGTAGCAGCTGTTCTTTCTGTATCAAAAGTTATTGCAAGCATACTACTTCGTCACCACAATTGGAGCGTCAATAAAGTGCATGATGCATGGTTTGCTGATGAAGAGCAAGTCCGAAAAGCGGTTGGCTTGTTGGATGAGCCAGTTGTCCAGCATCCTAATGCTAGAGAGCTTACATGCGGCATCTGTTTTGAAAACTATCCTCGTTCTGGGATTGAAATGGCTTCTTGTGGTCATCCATACTGTTTCTCATGCTGGGAAGGATATATCAGTACGTCCATTAATGACGGTCCTGGATGTTTGATGTTGAGATGTCCTGATCCCTCTTGTGGTGCTGCTATTGGTCAAGATATGATTGATTTATTAGCATCTAATGAAGATAAACAAAAGTATGACCGTTACCTTCTTAGATCTTATATCGAAGACAATAAAAAGTCAAAGTGGTGTCCTGCCCCTGGTTGTGATTATGCAGTTACTTTTGATGCTGGAGGTGCAAATTATGATGTCTCTTGCCTCTGTTCACATGGCTTTTGTTGGAATTGCACTGAGGAGGCTCATCGTCCAGTGGACTGTGGCACTGTGGTAAAGTGGATTATGAAAAACAGTGCAGAGTCCGAAAACATGAACTGGATACTTGCTAACTCAAAGCCATGTCCCAAGTGCAAGCGACCAATTGAAAAAAATCAAGGATGCATGCACATCACATGCACTCCACCCTGTAAATTTGACTTTTGTTGGTTATGCCTTGGTGCATGGTCAGACCATGGTGAAAGAACCGGTGGTTTCTATGCTTGCAATCGTTATGAAGCAGCTAAGCAAGAGGGAGTGTATGATGATActgaaagaagaagagaaatggCAAAGAACTCATTGGAGAGATACACACATTATTATGAACGGTGGGCCAGCAACCAATCTTCAAGGCAGAAAGCTCTTGCAGATCTAGATCAGATGCAAACTGTTCATATTGAGACGCTTAGTGACATTCAGTGCCAACCTGAGTCACAGCTTAAGTTCATTACGGAGGCCTGGCTGCAGaTAGTTGAGTGTAGGAGAGTGCTGAAATGGACATATGCATATGGTTACTATTTACCTGAGCATGAGCGTGCGAAAAAACAGTTCTTTGAGTATTTGCAAGGTGAAGCAGAATCTGGTCTAGAGAGACTTCATCAATGTGCTGAAAAAGAACTACAGCAATTCCTCAATGCTGAAGAAGGCCCGTCTAAAGAATTCAATGATTTCCGTACAAAGTTAGCTGGATTGACTAGTGTGACTAAAAACTACTTCGAGAACTTAGTGAGGGCTTTAGAGAATGGTCTATCAGATGTGGATGGTAATGGAGCTGTCTTCAGCAAAGCAACGAGCTCAAAAACTGCAGCAGGGAGCAGCAAGGGGAGAGCTGCAAGAATGCGAATCAGCAGAACGGCTGATGACAGTCCCTGGTCCTGCGAGCATTGTACCTCTATGAATGCCAGAACTTTATCCACATGCCAGATTTGTAATCAACGTAGATGA 1755 0.412 MDSEDDMHDANDMESLDYDDDDFYSGDTEGATIDYYSDYDDDDAGDYFDDADKIESRRPEQNFTILKESDIRMRQEDDINTVAAVLSVSKVIASILLRHHNWSVNKVHDAWFADEEQVRKAVGLLDEPVVQHPNARELTCGICFENYPRSGIEMASCGHPYCFSCWEGYISTSINDGPGCLMLRCPDPSCGAAIGQDMIDLLASNEDKQKYDRYLLRSYIEDNKKSKWCPAPGCDYAVTFDAGGANYDVSCLCSHGFCWNCTEEAHRPVDCGTVVKWIMKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHITCTPPCKFDFCWLCLGAWSDHGERTGGFYACNRYEAAKQEGVYDDTERRREMAKNSLERYTHYYERWASNQSSRQKALADLDQMQTVHIETLSDIQCQPESQLKFITEAWLQIVECRRVLKWTYAYGYYLPEHERAKKQFFEYLQGEAESGLERLHQCAEKELQQFLNAEEGPSKEFNDFRTKLAGLTSVTKNYFENLVRALENGLSDVDGNGAVFSKATSSKTAAGSSKGRAARMRISRTADDSPWSCEHCTSMNARTLSTCQICNQRR 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02228 584 MobiDBLite consensus disorder prediction 1 25 - -
Tsu02g02228 584 Gene3D - 267 523 - -
Tsu02g02228 584 SMART ibrneu5 284 345 IPR002867 -
Tsu02g02228 584 SMART ibrneu5 209 271 IPR002867 -
Tsu02g02228 584 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 134 224 IPR013083 -
Tsu02g02228 584 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 17 538 - -
Tsu02g02228 584 ProSitePatterns Zinc finger RanBP2-type signature. 561 580 IPR001876 -
Tsu02g02228 584 ProSiteProfiles TRIAD supradomain profile. 136 349 IPR044066 -
Tsu02g02228 584 Pfam IBR domain, a half RING-finger domain 209 271 IPR002867 -
Tsu02g02228 584 Pfam IBR domain, a half RING-finger domain 288 336 IPR002867 -
Tsu02g02228 584 SUPERFAMILY RING/U-box 290 338 - -
Tsu02g02228 584 SUPERFAMILY RING/U-box 136 221 - -
Tsu02g02228 584 SUPERFAMILY RING/U-box 210 278 - -
Tsu02g02228 584 CDD RING-HC_RBR_TRIAD1_like 140 190 - -
Tsu02g02228 584 Pfam Ariadne domain 358 520 IPR045840 -
Tsu02g02228 584 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 17 538 IPR031127 GO:0004842|GO:0016567
Tsu02g02228 584 ProSiteProfiles Zinc finger RING-type profile. 140 184 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02228 Tsu-Chr2 22318570 22325345 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02228 20 584 ARIADNE family AT1G65430 68.881 0.0 818
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02228 K11968 - gmx:100784195 1022.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g05280 02 61621374 61628776 Tsu02g02228 02 22318570 22325345 PCT