Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02196 ATGAACAACAATTGGCTTTCTTTCCCTCTTTCTCCTTCTCATCCTTCCTTACCTTCTAATGATCTTCAAGCAACTCAATATCATCACTTTCCTCTTGGTTTAGTCAATGAAAACATTGAAAACCCTTTTCAAAACCATGATTGGAATCTGATGAACACACATAGCAGCAATGAAGTACCAAAAGTTGCAGATTTTCTAGGTGTGTGCAAGTCTGAGAATCACTCAGATCTTGCTGCACCAAatgaaattcaatcaaatgattcagatagttatttatttacaaataacaacaataatttcATGCCAATGCAAAACCAACTGGTAACAACATGCACCAATGAGTATCAAGAAAAGGGTAGTAATAGTAATTTACAATCATTGACATTATCCATGGGAAGTGGTAAAGATTCAACATGTGAAACTAGTGGTGATACTAGTGCAAACACTCTTGAAGTAACTGCTCCTAAAAGAACTTCAGAAACATTTGGACAAAGAACTTCAATATATCGTGGTGTGACAAAaCATAGATGGACTGGAAGGTATGAAGCTCACCTTTGGGATAACAGCTGTAGAAGGGAAGGCCAGTCAAGAAAAGGCCGCCAAGGTGGATATGATAAAGAAGAGAAAGCTGCTAAGTCCTATGATTTAGCTGCACTTAAGTATTGGGGTACATCTACCACTACTAACTTTCCAGTTAGCAACTATGAGAAGGAAATAGATGAAATGAAGCACATGACAAGACAAGAATTTGTAGCCTCTATTAGAAGGAATAGCAGTGGTTTCTCTAGGGGTGCATCAAAGTACCGTGGAGTTACAAGGCATCACCAACATGGAAGATGGCAAGCCAGGATTGGCAGGGTTGCAGGAAACAAAGATCTTTACTTGGGAACTTTCAGCACTGAAGAAGAGGCTGCAGAAGCGTACGACATAGCAGCAATAAAATTCCGAGGACTCAACGCAGTCACAAACTTCGACATGACTCGTTATGATGTGAAAGCTATTCTAGAAAGCAACACACTTCCAATTGGAGGAGGAGCTGCAAAAAGACTAAAAGAAGCACAAGCTCTAGAAACTTCAAGAAAACGCGAAGAAATGCTCGCACTAAACTCGTCGTCTTTCCAATACGGAACAACATCAAGCTCAAGTAATAACAGACTTCAACCTTATCCTCTCAtgcattatcatcatcaatttgaacaacaacaactagTTGCTCAACCATTGTTAACCTTACAAAACAATCAAGAAAACATGTCTCAATTctctcaacaacaacatcaaggtGGTGGTGGTTATTTTCAAACACAGCTTGAGTTACAGCAACAACAGAACAACCAAACATCTCAGTATTACAATGGTTATTTTCAGAATCATCCTGGTTTGTTTCAGATGAATAATATGggatcatcttcttcttcatcttctgtgATGGGAAATAATGTTGGTGGTGGAGGGTCTAGTGGGATATATAGTAATAATGGAGGGTTAATTGGTAATAATGGTGTTGATGAGGAATTTGTGCCGGTTAAGGTTGATTATGATATGGCAGTTGATGGAAGTGGTTTTGGCGGCTGGTCGGCGGCAGGAGAGAACATGCAGACGTCTGCTACTGCTGATTTGTTTACAATGTGGAATGATTATGAGCCAAGAGAAAATTAG 1659 0.3653 MNNNWLSFPLSPSHPSLPSNDLQATQYHHFPLGLVNENIENPFQNHDWNLMNTHSSNEVPKVADFLGVCKSENHSDLAAPNEIQSNDSDSYLFTNNNNNFMPMQNQLVTTCTNEYQEKGSNSNLQSLTLSMGSGKDSTCETSGDTSANTLEVTAPKRTSETFGQRTSIYRGVTKHRWTGRYEAHLWDNSCRREGQSRKGRQGGYDKEEKAAKSYDLAALKYWGTSTTTNFPVSNYEKEIDEMKHMTRQEFVASIRRNSSGFSRGASKYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFDMTRYDVKAILESNTLPIGGGAAKRLKEAQALETSRKREEMLALNSSSFQYGTTSSSSNNRLQPYPLMHYHHQFEQQQLVAQPLLTLQNNQENMSQFSQQQHQGGGGYFQTQLELQQQQNNQTSQYYNGYFQNHPGLFQMNNMGSSSSSSSVMGNNVGGGGSSGIYSNNGGLIGNNGVDEEFVPVKVDYDMAVDGSGFGGWSAAGENMQTSATADLFTMWNDYEPREN 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02196 552 PRINTS Ethylene responsive element binding protein signature 169 180 IPR001471 GO:0003700|GO:0006355
Tsu02g02196 552 PRINTS Ethylene responsive element binding protein signature 307 327 IPR001471 GO:0003700|GO:0006355
Tsu02g02196 552 CDD AP2 167 233 IPR001471 GO:0003700|GO:0006355
Tsu02g02196 552 ProSiteProfiles AP2/ERF domain profile. 267 325 IPR001471 GO:0003700|GO:0006355
Tsu02g02196 552 Gene3D AP2/ERF domain 266 327 IPR036955 GO:0003700|GO:0006355
Tsu02g02196 552 Gene3D AP2/ERF domain 168 233 IPR036955 GO:0003700|GO:0006355
Tsu02g02196 552 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT2 4 545 - -
Tsu02g02196 552 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 4 545 - -
Tsu02g02196 552 Pfam AP2 domain 266 317 IPR001471 GO:0003700|GO:0006355
Tsu02g02196 552 Pfam AP2 domain 168 223 IPR001471 GO:0003700|GO:0006355
Tsu02g02196 552 SMART rav1_2 168 237 IPR001471 GO:0003700|GO:0006355
Tsu02g02196 552 SMART rav1_2 267 331 IPR001471 GO:0003700|GO:0006355
Tsu02g02196 552 ProSiteProfiles AP2/ERF domain profile. 168 231 IPR001471 GO:0003700|GO:0006355
Tsu02g02196 552 SUPERFAMILY DNA-binding domain 266 326 IPR016177 GO:0003677
Tsu02g02196 552 CDD AP2 266 325 IPR001471 GO:0003700|GO:0006355
Tsu02g02196 552 SUPERFAMILY DNA-binding domain 167 233 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02196 Tsu-Chr2 21696996 21700326 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02196 3 546 AP2-EREBP Transcription Factor Family AT1G51190 59.191 0.0 605
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Tsu02g02196 AP2 6.2e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02196 K09285 - gmx:100788471 707.597