Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02192 atggagTCAGATCTTCAGCAGCATCCAACTATGTTTCTagatcatcaaaatcatcatcaacaacaaatgaaTTCAGGGTTAACAAGGTTTAAATCTGCACCAAGTTCTTATTTTTCGAATATTATTGATAAAGAATTCTATGAGCATCTTTTCAATAGACCTTCAAGTCCTGAAACAGAAAGAGTTTTTGCACGGTTTATGAATAGTCTTAGTGGTAGTggaagtggtggtggtggtggtgatgctGAAAGTGTTTCTGTTTCTGTTTCTGCTTCTGCTTCTGTTGCTGTTGTAGATGATTCACTGACTCAGAATCTTCAACAGCAACTTCCTATAGTGAAGGAAGAGATTGATCAACAATCTCAAACTATGACATCAAtgaatactaataataataatgaaactATGAATCTTCAACAGCTTCAAAGAACACAAAGTAATATGAATAGTTATGGTTCTTCAACTCCTCAGAATTTTTACCAAAGTTCTGGAAGACCACCTTTGCCAAATTCAATGAAGACTGGTAGAGGAAATTGTTCTAATCTTATTAGACATGGTAGTTCACCTGCTGGATTGTTTTCAAATATTAACATTGAAACTGGATTTGCAGCTATGAGAGGCATAGGATCTATGGGAGCTGCTAGTAGTACTAGCAAAGAAGCAAAGTTTTCTTCTGCAGTAAGGTTAAAGAATGCTTCGAACTACTCCTCAGTGTTAGGAGCTGAAATTGGAAGTAGTAGCATTCCACCAAATAATCCTGAACCTGAAGGTTTTGCTGAAACCCGGGGTAACGATTTTATCCCGGGTTTCCCCTTAGGTACTACATGGGAAGATACTGCAATGATATCTGACAATATTACCGGTGTAAAAAGATAccgagatgatgatgatgtaaaACCATTTTCTGCAGGTTTAAATCCAGCTGAAACTAAGAATGAAACAGGAGGCCAGCCTCCTACTGCTCCTTTAGCTCATCAGATGAGTTTGCCGAATACTACGGCGGAGTTAGCAGCCATTGAGAAGTTTTTGCAATTCTCGGATTCTGTTCCGTGCAAAATTCGTGCCAAGCGCGGCTGCGCCACTCACCCGAGAAGCATTGCAGAAAGGGTTAGAAGAACTAAAATTAGTGAAAGAATGAGGAAACTACAAGATCTTGTGCCAAACATGGATAAGGTAAAGGTTTTGTTTGACTTGTGGCACACTTACCAACCAACCTATACGTATGTAGATTGTAGCTACCTTAATTAA 1248 0.355 MESDLQQHPTMFLDHQNHHQQQMNSGLTRFKSAPSSYFSNIIDKEFYEHLFNRPSSPETERVFARFMNSLSGSGSGGGGGDAESVSVSVSASASVAVVDDSLTQNLQQQLPIVKEEIDQQSQTMTSMNTNNNNETMNLQQLQRTQSNMNSYGSSTPQNFYQSSGRPPLPNSMKTGRGNCSNLIRHGSSPAGLFSNINIETGFAAMRGIGSMGAASSTSKEAKFSSAVRLKNASNYSSVLGAEIGSSSIPPNNPEPEGFAETRGNDFIPGFPLGTTWEDTAMISDNITGVKRYRDDDDVKPFSAGLNPAETKNETGGQPPTAPLAHQMSLPNTTAELAAIEKFLQFSDSVPCKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDKVKVLFDLWHTYQPTYTYVDCSYLN 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02192 415 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 16 391 - -
Tsu02g02192 415 MobiDBLite consensus disorder prediction 298 318 - -
Tsu02g02192 415 MobiDBLite consensus disorder prediction 144 176 - -
Tsu02g02192 415 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 359 415 IPR011598 GO:0046983
Tsu02g02192 415 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 362 393 IPR036638 GO:0046983
Tsu02g02192 415 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 16 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02192 Tsu-Chr2 21586908 21590713 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02192 1 390 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 38.025 2.06e-56 188
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02192 - - gmx:100803833 466.463