Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02187 ATGCATTGCTGCTGCAACCGTTGCTGTAAGAGTTGCACTTCCAAAGgTTCAACGAATAATAACAATTCTTGGTTTCCAGATGAAAAAAGAGAGATGAATGGGTTCGATGATAATCTCAAGAAACCTTTGTTGCGGAAACAAGATGTTGAAGTTACACCTAGTATCACAGATgcaaaaaatataaaagaagcTAGAGTTAATGTTAATAAGCTGAAGGAGAAAGAAACATTTGAATGCCGAATCAAGATAAAGGGAATGAATTGCATAGGTTGCTCTAAATCTGTTCAGCATGCTTTGCAAAGGGTTGAAGGAGTCAACAAGGCAGTAATTGGTTCAACCTTAGATGAAACAAAAGTACTATATGATCCTAAACTCATGGATaccaacaaaataattgaaGTTGTCGAAGATTCCGGCTTTGAAGCAGAACTTGTTTGTTCAAGGAAGGACATAAACCAAGTTTTGTTATGCTGCTTATTTTCTGTCGTGTGCTTATGTGTTCCATGA 507 0.3471 MHCCCNRCCKSCTSKGSTNNNNSWFPDEKREMNGFDDNLKKPLLRKQDVEVTPSITDAKNIKEARVNVNKLKEKETFECRIKIKGMNCIGCSKSVQHALQRVEGVNKAVIGSTLDETKVLYDPKLMDTNKIIEVVEDSGFEAELVCSRKDINQVLLCCLFSVVCLCVP 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02187 168 PANTHER ATP7, ISOFORM B 31 156 - -
Tsu02g02187 168 SUPERFAMILY HMA, heavy metal-associated domain 74 145 IPR036163 GO:0046872
Tsu02g02187 168 ProSiteProfiles Heavy-metal-associated domain profile. 78 144 IPR006121 GO:0046872
Tsu02g02187 168 CDD HMA 81 143 IPR006121 GO:0046872
Tsu02g02187 168 Pfam Heavy-metal-associated domain 81 141 IPR006121 GO:0046872
Tsu02g02187 168 ProSitePatterns Heavy-metal-associated domain. 83 112 IPR017969 GO:0046872
Tsu02g02187 168 Gene3D - 76 147 - -
Tsu02g02187 168 PRINTS Copper-transporting ATPase 1 signature 78 103 - -
Tsu02g02187 168 PRINTS Copper-transporting ATPase 1 signature 104 127 - -
Tsu02g02187 168 PRINTS Copper-transporting ATPase 1 signature 133 153 - -
Tsu02g02187 168 PANTHER COPPER-TRANSPORTING ATPASE HMA5-RELATED 31 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02187 Tsu-Chr2 21539294 21540156 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02187 30 156 Primary Pumps ATPases AT1G63440 28.889 3.10e-19 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02187 K17686 - egr:104421533 104.76