Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02186 ATGCATTGTTGCAACAGTTCCGAAGgttcaaTGAATAATAAGTCTTGGTCTCCAGAAGAAAATAGAGAGATTAATGCCTTCGAGGATGATCTCAAGAAACCTTTGTTGCATATTCAAGAGGCTAAAGATACACCTAGTACTAGTACGCTTAACAGCATGGTTTCTGATGCAAACAATATAAAAGAAACTAGAATTGATGTTAACAAGCTGAAAGGGAAAGAAACATCCGAATGCCGAATCAAGATTAAGGGAATGACTTGCACAAGTTGTTCTCAATCTGTTGAGCATGCTTTGCAAATGGTTGAAGGAGTAAAAAAGGCAGTAGTTGGTTTAGCTTTAGAGGAGGCAAAAGTACTATATGATCCTAAACTCCTCGATaccaacaaaataattgaaGCTGTCGAAGATTCCGGCTTTGGAGCGGAACTTGTTGTTAGTTCAAGGAATAATGACATGAACAAAGTGAATGAAATTCGTATGAACAGGAACCAAGTTTTGTTAAGCTGCTTATTTTCTATTCctgtgtttttgttttcaatgaTTCTTCCAATGCTTCCTCCATATGGTAACTGGTTAAACTATAAGATTCATAATATGTTAACTCTTGGTTTGTTTTTAAGATGGATCATCAGTACTCCTGTTCAGTTCATTGTTGGCAAAAGGTTTTATTTAGGTTCATATCATTCACTAAGGAGATGGTCAGCTAACATGGATGTGCTGGTTGCACTTGGAACTAATGCGGCTTATTTTTACTCAGTATATGTTGTATTTAGATCACTGACTTCAGCCACATTTCAAGGACAAGATTTCTTTGAGACAAGTTCTATGCTGATATCGTTTATTCTATTTGGAAAATATTTGGAAATTATGGCTAAAGGGAAAACATCAGCTGCTTTAGAAAAGCTTATACAGCTTGTTCCTGATAAGGCTTATTTGTTAGATATTGATGTTAATGGAAATGTAGTTTCAGAGACAGAAGTTGACACTTTACTTATTCAAAAGAATGACATAATTAAGATTGTTCCCGGTGCTAAAATTCCTGTTGATGGTATTGTTATAAAAGGGAAAAGCTGTGCAAATGAAAGCATGATCACAGGTGAATCAAGACCTGTTAATAAAATTCCTGGAGATAAGGTTATCAGTGGGACAATCAATGAGAATGGTTGCTTACTGGTCAAGGCAACTCATGTTGGATCTGAGACTGCACTTTCTCAAATTGTTCAACTTGTAGAAGCTGCTCAACTTGCAAAAGCTCCAGTTCAGAAGCTTGCAGATGATATTTCAAAGGTTTTTGTTCCAATGgttgTTTCTGCATCAATCATAACTTGGTTGGCATGGTTTATTCCTGGAAAAGAAGGTTTATATCCTAGAAATTGGATACCAAAAGCTAtggatgaatttgaatttgCTTTGCAGTTTGCTATTTCTGTGCTGGTTGTTGCCTGTCCATGTGCTCTTGGTCTAGCTACACCGACGGCTATCATGGTTGCTTCAGGAGTTGGTGCTTCTCAAGGTGTGCTCATCAAAGGTGGAGATGCACTGGAAAAAGCACACAAGGTAAACATTGTTGTGTTTGATAAGACTGGGACATTGACAATTGGGAAGCCAGTGGTCGTCAGCGTAGTTCTGTTTTCTAAATTTTCTATGGAGGAGTTATGTGAAATGACAATTGCTGTTGAGGCAAATAGTGAACATCCAATTGCAAAAGCTGTTGTAGCACATGCTAAGAAACTGCGGCGCCAGAGTTTTGTGTCTTCAAACAATGAACAAGTCGAAGATGTGAATGACTTTGAGGTACATATGGGAAGTGGTGTAAGTGGAAAAGTGAAGGACAAGAAAGTTTTAGTTGGAAACAAGAGACTTATGCATGCTTTTAATGTACCAATAAGTTCGAATGTTGAGAAGCACATATCTGAGAATGAAATTATGGCAAGAACTTGTGTATTAGTTTCAATTGAAGGAAAGATTGCTGGAGCATTCTCAGTGACAGACCCTGTAAAGCCAGAGGCAAAGAGTGTCATATCTTTTCTTCACTCCATGGACATCTCAACCATCATAGTTACTGGTGATAACCGTGCAACTGCAAATGCTATCGGAAATGAAGTTGGTATTAGTAATTTTTATGCTGAGATAGATCCTCAAGGAAAAGTTGATATTGTCAAAGATTTGCAGATGAAGGGAATGATTGTGGCTATGGTAGGCGATGGAGTAAACGATTCGCCAGCCTTAGCAGCAGCGGATATTGGAATGGCAATCGGTGCAGGAACAGACATAGCAATAGAAGCAGCCGATATCGTTTTAGTCAAAAGTAACTTGGAAGATGTTATTACAGCAATAGATTTGTCTAGAAAAGCCATGTCTCGTATCTGGCTTAACTATATATGTGCTTTTGGTTACAACATTCTTAGTATGCCGATTGCAGCCGGTGTTTTGTACCCTCTTTTGGGAATCAGGTTGCCTCCATGGCTTGCTGGTGCTTGCATGGCTGCTTCATCAATTAGTGTAGTTTCTTCCTCACTCTTGTTGATGTTCTACAAGAAGcctttgttgttgatgaatcaCGTTGGACCCGGATCTGCTGCAGTATAA 2589 0.3743 MHCCNSSEGSMNNKSWSPEENREINAFEDDLKKPLLHIQEAKDTPSTSTLNSMVSDANNIKETRIDVNKLKGKETSECRIKIKGMTCTSCSQSVEHALQMVEGVKKAVVGLALEEAKVLYDPKLLDTNKIIEAVEDSGFGAELVVSSRNNDMNKVNEIRMNRNQVLLSCLFSIPVFLFSMILPMLPPYGNWLNYKIHNMLTLGLFLRWIISTPVQFIVGKRFYLGSYHSLRRWSANMDVLVALGTNAAYFYSVYVVFRSLTSATFQGQDFFETSSMLISFILFGKYLEIMAKGKTSAALEKLIQLVPDKAYLLDIDVNGNVVSETEVDTLLIQKNDIIKIVPGAKIPVDGIVIKGKSCANESMITGESRPVNKIPGDKVISGTINENGCLLVKATHVGSETALSQIVQLVEAAQLAKAPVQKLADDISKVFVPMVVSASIITWLAWFIPGKEGLYPRNWIPKAMDEFEFALQFAISVLVVACPCALGLATPTAIMVASGVGASQGVLIKGGDALEKAHKVNIVVFDKTGTLTIGKPVVVSVVLFSKFSMEELCEMTIAVEANSEHPIAKAVVAHAKKLRRQSFVSSNNEQVEDVNDFEVHMGSGVSGKVKDKKVLVGNKRLMHAFNVPISSNVEKHISENEIMARTCVLVSIEGKIAGAFSVTDPVKPEAKSVISFLHSMDISTIIVTGDNRATANAIGNEVGISNFYAEIDPQGKVDIVKDLQMKGMIVAMVGDGVNDSPALAAADIGMAIGAGTDIAIEAADIVLVKSNLEDVITAIDLSRKAMSRIWLNYICAFGYNILSMPIAAGVLYPLLGIRLPPWLAGACMAASSISVVSSSLLLMFYKKPLLLMNHVGPGSAAV 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02186 862 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 237 842 IPR027256 GO:0006812|GO:0016021|GO:0019829
Tsu02g02186 862 SFLD p-type atpase 506 784 IPR044492 -
Tsu02g02186 862 SUPERFAMILY Calcium ATPase, transduction domain A 325 410 IPR008250 -
Tsu02g02186 862 Pfam haloacid dehalogenase-like hydrolase 520 747 - -
Tsu02g02186 862 Pfam E1-E2 ATPase 323 502 - -
Tsu02g02186 862 Gene3D - 491 789 IPR023214 -
Tsu02g02186 862 Gene3D - 531 612 IPR023299 GO:0000166
Tsu02g02186 862 Gene3D - 613 664 IPR023299 GO:0000166
Tsu02g02186 862 Gene3D - 69 147 - -
Tsu02g02186 862 PANTHER ATP7, ISOFORM B 143 853 - -
Tsu02g02186 862 PANTHER ATP7, ISOFORM B 58 155 - -
Tsu02g02186 862 ProSitePatterns Heavy-metal-associated domain. 82 111 IPR017969 GO:0046872
Tsu02g02186 862 SUPERFAMILY HMA, heavy metal-associated domain 74 143 IPR036163 GO:0046872
Tsu02g02186 862 PRINTS P-type cation-transporting ATPase superfamily signature 658 669 - -
Tsu02g02186 862 PRINTS P-type cation-transporting ATPase superfamily signature 680 690 - -
Tsu02g02186 862 PRINTS P-type cation-transporting ATPase superfamily signature 733 752 - -
Tsu02g02186 862 PRINTS P-type cation-transporting ATPase superfamily signature 524 538 - -
Tsu02g02186 862 PRINTS P-type cation-transporting ATPase superfamily signature 756 768 - -
Tsu02g02186 862 PRINTS P-type cation-transporting ATPase superfamily signature 360 374 - -
Tsu02g02186 862 SUPERFAMILY Calcium ATPase, transmembrane domain M 276 516 IPR023298 -
Tsu02g02186 862 CDD P-type_ATPase_Cu-like 165 829 - -
Tsu02g02186 862 ProSitePatterns E1-E2 ATPases phosphorylation site. 526 532 IPR018303 -
Tsu02g02186 862 CDD HMA 80 142 IPR006121 GO:0046872
Tsu02g02186 862 SUPERFAMILY HAD-like 522 839 IPR036412 -
Tsu02g02186 862 PANTHER COPPER-TRANSPORTING ATPASE HMA5-RELATED 143 853 - -
Tsu02g02186 862 PANTHER COPPER-TRANSPORTING ATPASE HMA5-RELATED 58 155 - -
Tsu02g02186 862 Pfam Heavy-metal-associated domain 80 139 IPR006121 GO:0046872
Tsu02g02186 862 SFLD Haloacid Dehalogenase 506 784 - -
Tsu02g02186 862 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 277 812 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Tsu02g02186 862 Gene3D - 292 414 - -
Tsu02g02186 862 ProSiteProfiles Heavy-metal-associated domain profile. 77 143 IPR006121 GO:0046872
Tsu02g02186 862 PRINTS H+-transporting ATPase (proton pump) signature 705 721 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Tsu02g02186 862 PRINTS H+-transporting ATPase (proton pump) signature 764 789 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Tsu02g02186 862 PRINTS H+-transporting ATPase (proton pump) signature 733 749 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02186 Tsu-Chr2 21522783 21526493 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02186 36 848 Primary Pumps ATPases AT1G63440 54.866 0.0 876
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02186 K17686 - gmx:100793894 1113.98