Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tsu02g02181 | ATGAGTTGGAACCCGCATATGGAAGTCCATTACAATAACATCAGCTATCCCTATAATACGGCAGGAAGTTTTATCGAATATTTTGAAGGCCTCACCTATGAACAtgttaacttcattttttccgGTGCATCACATGCTCAGGAGAGTCCGTACCcgtcaaattcaaacttttacAAGTTTGGACTATCGGAACCTGAGAATACTTCTTACTACCGCTACAATAATGGTTATGAGGTAAATCATCACGAACCACTAATGGATGAGTATAGGAGGCCTTCAGAAAACTCCTCAACAATCAGTGAACAGACCCTGGCTGGAAACACAGAATGGGGTGAAGATGGAAACACTGATGCACAAGACAATTCTATTGAATGCCCACGAAGACATCATAGTAATTCCAATGATTCTCAGGTCATTTGGCAAGACAATATTGATCCTGACAACATGACCTATGAGGAATTACTTGAACTAGGTGAGGCTGTTGGAACTCAAAGCCGTGGTCTCACCCAAGAACAGATCTCCTCGCTTCCAGTTTCGAAGTTCAAGTGTGGGTTCTTCTTGAGGAAGAAGTCACGGAATGAACgATGCGTGATTTGCCAGATGGAATATAAAAGGGGGGACAAGAGGATCACTCTGCCATGTAAACATCTATATCATGCTAATTGTGGGAACAAATGGCTTAGCATCAATAAGGCTTGCCCTATATGTTACACAGAAGTATTTGCCGaccaatcaaaacaaaaataa | 747 | 0.3922 | MSWNPHMEVHYNNISYPYNTAGSFIEYFEGLTYEHVNFIFSGASHAQESPYPSNSNFYKFGLSEPENTSYYRYNNGYEVNHHEPLMDEYRRPSENSSTISEQTLAGNTEWGEDGNTDAQDNSIECPRRHHSNSNDSQVIWQDNIDPDNMTYEELLELGEAVGTQSRGLTQEQISSLPVSKFKCGFFLRKKSRNERCVICQMEYKRGDKRITLPCKHLYHANCGNKWLSINKACPICYTEVFADQSKQK | 248 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tsu02g02181 | 248 | Pfam | Ring finger domain | 195 | 236 | IPR001841 | - | |
Tsu02g02181 | 248 | MobiDBLite | consensus disorder prediction | 106 | 134 | - | - | |
Tsu02g02181 | 248 | ProSiteProfiles | Zinc finger RING-type profile. | 196 | 236 | IPR001841 | - | |
Tsu02g02181 | 248 | MobiDBLite | consensus disorder prediction | 106 | 121 | - | - | |
Tsu02g02181 | 248 | PANTHER | RING/U-BOX SUPERFAMILY PROTEIN | 1 | 246 | - | - | |
Tsu02g02181 | 248 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 158 | 242 | IPR013083 | - | |
Tsu02g02181 | 248 | PANTHER | RING/U-BOX SUPERFAMILY PROTEIN | 1 | 246 | IPR033276 | GO:0004842|GO:0016567|GO:0046621 | |
Tsu02g02181 | 248 | SMART | ring_2 | 196 | 236 | IPR001841 | - | |
Tsu02g02181 | 248 | SUPERFAMILY | RING/U-box | 195 | 243 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Tsu02g02181 | Tsu-Chr2 | 21464060 | 21468728 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Tsu02g02181 | 5 | 245 | C3H Transcription Factor Family | AT3G63530 | 42.915 | 3.01e-66 | 204 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tsu02g02181 | K19045 | - | gmx:100793907 | 484.952 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Tsu02g02181 | 02 | 21464060 | 21468728 | Tsu02g02181 | 02 | 21464060 | 21468728 | ECH |