Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02181 ATGAGTTGGAACCCGCATATGGAAGTCCATTACAATAACATCAGCTATCCCTATAATACGGCAGGAAGTTTTATCGAATATTTTGAAGGCCTCACCTATGAACAtgttaacttcattttttccgGTGCATCACATGCTCAGGAGAGTCCGTACCcgtcaaattcaaacttttacAAGTTTGGACTATCGGAACCTGAGAATACTTCTTACTACCGCTACAATAATGGTTATGAGGTAAATCATCACGAACCACTAATGGATGAGTATAGGAGGCCTTCAGAAAACTCCTCAACAATCAGTGAACAGACCCTGGCTGGAAACACAGAATGGGGTGAAGATGGAAACACTGATGCACAAGACAATTCTATTGAATGCCCACGAAGACATCATAGTAATTCCAATGATTCTCAGGTCATTTGGCAAGACAATATTGATCCTGACAACATGACCTATGAGGAATTACTTGAACTAGGTGAGGCTGTTGGAACTCAAAGCCGTGGTCTCACCCAAGAACAGATCTCCTCGCTTCCAGTTTCGAAGTTCAAGTGTGGGTTCTTCTTGAGGAAGAAGTCACGGAATGAACgATGCGTGATTTGCCAGATGGAATATAAAAGGGGGGACAAGAGGATCACTCTGCCATGTAAACATCTATATCATGCTAATTGTGGGAACAAATGGCTTAGCATCAATAAGGCTTGCCCTATATGTTACACAGAAGTATTTGCCGaccaatcaaaacaaaaataa 747 0.3922 MSWNPHMEVHYNNISYPYNTAGSFIEYFEGLTYEHVNFIFSGASHAQESPYPSNSNFYKFGLSEPENTSYYRYNNGYEVNHHEPLMDEYRRPSENSSTISEQTLAGNTEWGEDGNTDAQDNSIECPRRHHSNSNDSQVIWQDNIDPDNMTYEELLELGEAVGTQSRGLTQEQISSLPVSKFKCGFFLRKKSRNERCVICQMEYKRGDKRITLPCKHLYHANCGNKWLSINKACPICYTEVFADQSKQK 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02181 248 Pfam Ring finger domain 195 236 IPR001841 -
Tsu02g02181 248 MobiDBLite consensus disorder prediction 106 134 - -
Tsu02g02181 248 ProSiteProfiles Zinc finger RING-type profile. 196 236 IPR001841 -
Tsu02g02181 248 MobiDBLite consensus disorder prediction 106 121 - -
Tsu02g02181 248 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 246 - -
Tsu02g02181 248 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 158 242 IPR013083 -
Tsu02g02181 248 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 246 IPR033276 GO:0004842|GO:0016567|GO:0046621
Tsu02g02181 248 SMART ring_2 196 236 IPR001841 -
Tsu02g02181 248 SUPERFAMILY RING/U-box 195 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02181 Tsu-Chr2 21464060 21468728 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02181 5 245 C3H Transcription Factor Family AT3G63530 42.915 3.01e-66 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02181 K19045 - gmx:100793907 484.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g02181 02 21464060 21468728 Tsu02g02181 02 21464060 21468728 ECH